Plant Circular RNA Database

Detail information of Os10g0569200_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os10g0569200_circ_g.5
					
						ID in PlantcircBase
						osa_circ_008085
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 22565516-22566925  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0569200						
					
						Parent gene annotation
						
							Six-bladed beta-propeller, TolB-like domain containing protein. 
(Os10t0569200-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0569200_circ_g.3 Os10g0569200_circ_g.4 Os10g0569200_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0569200-01:5

General Information
CircRNA Name	Os10g0569200_circ_g.5
ID in PlantcircBase	osa_circ_008085
Alias	NA
Organism	Oryza sativa
Position	chr10: 22565516-22566925 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0569200
Parent gene annotation	Six-bladed beta-propeller, TolB-like domain containing protein. (Os10t0569200-01)
Parent gene strand	-
Alternative splicing	Os10g0569200_circ_g.3 Os10g0569200_circ_g.4 Os10g0569200_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0569200-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCTGGTGGAACAACGGGCAGGTTGTCCACGACAACAACGTTAGCAAACCCCATTTCAAGCTCC
ATAGGGTCATCAATCCGAAGTAAATCCTCATCGTCAatgagtgtctctagggttgctgggctcg
tggctactatatgtgaccaaatatttctcaccaggggagaagtcaatcagtttcacctgttaca
agcagtgt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 730
Transcript exons: 22565516-22565599,22565672-22565800,22565916-22566044,22
566172-22566318,22566685-22566925
ATGAGTGTCTCTAGGGTTGCTGGGCTCGTGGCTACTATATGTGACCAAATATTTCTCACCAGGG
GAGAAGTCAATCAGTTTCACCTGTGCATGAGCAAATCGCATTAGACGCTCAAACTTATCGTCGC
CACCCCACACCTGGGAGCCCTGCCTATGCACTGTTGCCAAGTATGTTCCAAGAGGGGACCACTG
AATAAAACTGTCTGTCCAGTACTGCTTTTGGAACACAAGTTCAGGCATCTTCTGCCTTGCATCA
TTCCAGTAAACTTCAGTGAAAGTACCAGCACGGATAACAAATTGGTCCCGGGCCTTCTCATCAG
CCAGCCATTTTTGCAAGTTCTCTCCAGGAGTGTATGGCTTAATTTCAGCAGGCATCCATTCGTC
TGGAACTTTCATGTACTTGTCAAAGTCATCAAACATGTTAACTGCAAAGATGTGAGACTTGTCG
AGCTTGTACCCATTTGTCTTTTCCCTAGCAAGCTCAGCTTCCTGTGGGGTATTATACTCGATGA
AGCAGTAACCGTATGTCTTCTTTGTCTCTGGGTTTACAGGCATCCAAAGACCACCTTCTTTGAT
CGCACCAATTTGACTGTAGATCTTGCGTATGACGTTCTCCAACTTCTCAAACTTCTCTGGTGGA
ACAACGGGCAGGTTGTCCACGACAACAACGTTAGCAAACCCCATTTCAAGCTCCATAGGGTCAT
CAATCCGAAGTAAATCCTCATCGTCA
						
					

						Genomic sequence
						
							ATGAGTGTCTCTAGGGTTGCTGGGCTCGTGGCTACTATATGTGACCAAATATTTCTCACCAGGG
GAGAAGTCAATCAGTTTCACCTGTTACAAGCAGTGTTAGGTAGATAAAATATTACATATCTGAC
ATAACTCAGTGCAGCGTAAATCACGTACCTGTGCATGAGCAAATCGCATTAGACGCTCAAACTT
ATCGTCGCCACCCCACACCTGGGAGCCCTGCCTATGCACTGTTGCCAAGTATGTTCCAAGAGGG
GACCACTGAATAAAACTGTCTGTCCAGTACTAGACGAGTAAAAAAAAAGGTAAAGTGATGAGTA
TATTCAGTTATGCATTGGGAGTGCAGAGCACAGTTCATGACCTTAAATTTTTCAATTTCAATTC
AAGAAACCCAAGGTACCTGCTTTTGGAACACAAGTTCAGGCATCTTCTGCCTTGCATCATTCCA
GTAAACTTCAGTGAAAGTACCAGCACGGATAACAAATTGGTCCCGGGCCTTCTCATCAGCCAGC
CATTTTTGCAAGTTCTCCTGCAAAACATGTGCAAAATCTAGGTATTAGGCAATGTCACAAAAAG
GATCTTAATAATTTTCAAAATTAAAATGCTCATTAAAAAATAAACACGCTTTTGGGTGGTGTAA
AGTTGAAAATGCTTACTCCAGGAGTGTATGGCTTAATTTCAGCAGGCATCCATTCGTCTGGAAC
TTTCATGTACTTGTCAAAGTCATCAAACATGTTAACTGCAAAGATGTGAGACTTGTCGAGCTTG
TACCCATTTGTCTTTTCCCTAGCAAGCTCAGCTTCCTGACATAATGTCAAACAAAGTAATACAA
ACTTAAACCCTACTAGACTTAAAAATGAACATAAAAACGAAACATCCGACAGAGTCGTTCAATT
TCCTATTTTTCCTCACCTGACTATAAGTAAAGATCACAATATTTCTATCTTACATCATATTAAA
CGATTAAAAGCTAAATGAACATGGATGAAGCAAATAATGATGGTTCAAAACAATATTTAAATGA
TTGGGCCCATGGCGTTCTCAAGGCATGTACTCATGTGTGATCCATGTTCAAATGGTACAGATCT
GAGGGATGACTTGCAAAGACAAGAATCAAGCCATGTGTCATGCTCTAAGGGGAAAAATGCATCT
GACATGTGGCAAAGTACCTGTGGGGTATTATACTCGATGAAGCAGTAACCGTATGTCTTCTTTG
TCTCTGGGTTTACAGGCATCCAAAGACCACCTTCTTTGATCGCACCAATTTGACTGTAGATCTT
GCGTATGACGTTCTCCAACTTCTCAAACTTCTCTGGTGGAACAACGGGCAGGTTGTCCACGACA
ACAACGTTAGCAAACCCCATTTCAAGCTCCATAGGGTCATCAATCCGAAGTAAATCCTCATCGT
CA
						
					

			
		

Sequences
Splice junction sequence	CTCTGGTGGAACAACGGGCAGGTTGTCCACGACAACAACGTTAGCAAACCCCATTTCAAGCTCC ATAGGGTCATCAATCCGAAGTAAATCCTCATCGTCAatgagtgtctctagggttgctgggctcg tggctactatatgtgaccaaatatttctcaccaggggagaagtcaatcagtttcacctgttaca agcagtgt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 730 Transcript exons: 22565516-22565599,22565672-22565800,22565916-22566044,22 566172-22566318,22566685-22566925 ATGAGTGTCTCTAGGGTTGCTGGGCTCGTGGCTACTATATGTGACCAAATATTTCTCACCAGGG GAGAAGTCAATCAGTTTCACCTGTGCATGAGCAAATCGCATTAGACGCTCAAACTTATCGTCGC CACCCCACACCTGGGAGCCCTGCCTATGCACTGTTGCCAAGTATGTTCCAAGAGGGGACCACTG AATAAAACTGTCTGTCCAGTACTGCTTTTGGAACACAAGTTCAGGCATCTTCTGCCTTGCATCA TTCCAGTAAACTTCAGTGAAAGTACCAGCACGGATAACAAATTGGTCCCGGGCCTTCTCATCAG CCAGCCATTTTTGCAAGTTCTCTCCAGGAGTGTATGGCTTAATTTCAGCAGGCATCCATTCGTC TGGAACTTTCATGTACTTGTCAAAGTCATCAAACATGTTAACTGCAAAGATGTGAGACTTGTCG AGCTTGTACCCATTTGTCTTTTCCCTAGCAAGCTCAGCTTCCTGTGGGGTATTATACTCGATGA AGCAGTAACCGTATGTCTTCTTTGTCTCTGGGTTTACAGGCATCCAAAGACCACCTTCTTTGAT CGCACCAATTTGACTGTAGATCTTGCGTATGACGTTCTCCAACTTCTCAAACTTCTCTGGTGGA ACAACGGGCAGGTTGTCCACGACAACAACGTTAGCAAACCCCATTTCAAGCTCCATAGGGTCAT CAATCCGAAGTAAATCCTCATCGTCA
Genomic sequence	ATGAGTGTCTCTAGGGTTGCTGGGCTCGTGGCTACTATATGTGACCAAATATTTCTCACCAGGG GAGAAGTCAATCAGTTTCACCTGTTACAAGCAGTGTTAGGTAGATAAAATATTACATATCTGAC ATAACTCAGTGCAGCGTAAATCACGTACCTGTGCATGAGCAAATCGCATTAGACGCTCAAACTT ATCGTCGCCACCCCACACCTGGGAGCCCTGCCTATGCACTGTTGCCAAGTATGTTCCAAGAGGG GACCACTGAATAAAACTGTCTGTCCAGTACTAGACGAGTAAAAAAAAAGGTAAAGTGATGAGTA TATTCAGTTATGCATTGGGAGTGCAGAGCACAGTTCATGACCTTAAATTTTTCAATTTCAATTC AAGAAACCCAAGGTACCTGCTTTTGGAACACAAGTTCAGGCATCTTCTGCCTTGCATCATTCCA GTAAACTTCAGTGAAAGTACCAGCACGGATAACAAATTGGTCCCGGGCCTTCTCATCAGCCAGC CATTTTTGCAAGTTCTCCTGCAAAACATGTGCAAAATCTAGGTATTAGGCAATGTCACAAAAAG GATCTTAATAATTTTCAAAATTAAAATGCTCATTAAAAAATAAACACGCTTTTGGGTGGTGTAA AGTTGAAAATGCTTACTCCAGGAGTGTATGGCTTAATTTCAGCAGGCATCCATTCGTCTGGAAC TTTCATGTACTTGTCAAAGTCATCAAACATGTTAACTGCAAAGATGTGAGACTTGTCGAGCTTG TACCCATTTGTCTTTTCCCTAGCAAGCTCAGCTTCCTGACATAATGTCAAACAAAGTAATACAA ACTTAAACCCTACTAGACTTAAAAATGAACATAAAAACGAAACATCCGACAGAGTCGTTCAATT TCCTATTTTTCCTCACCTGACTATAAGTAAAGATCACAATATTTCTATCTTACATCATATTAAA CGATTAAAAGCTAAATGAACATGGATGAAGCAAATAATGATGGTTCAAAACAATATTTAAATGA TTGGGCCCATGGCGTTCTCAAGGCATGTACTCATGTGTGATCCATGTTCAAATGGTACAGATCT GAGGGATGACTTGCAAAGACAAGAATCAAGCCATGTGTCATGCTCTAAGGGGAAAAATGCATCT GACATGTGGCAAAGTACCTGTGGGGTATTATACTCGATGAAGCAGTAACCGTATGTCTTCTTTG TCTCTGGGTTTACAGGCATCCAAAGACCACCTTCTTTGATCGCACCAATTTGACTGTAGATCTT GCGTATGACGTTCTCCAACTTCTCAAACTTCTCTGGTGGAACAACGGGCAGGTTGTCCACGACA ACAACGTTAGCAAACCCCATTTCAAGCTCCATAGGGTCATCAATCCGAAGTAAATCCTCATCGT CA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.251067796

Conservation Information
Conserved circRNAs	NA
PMCS	0.251067796

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22566801-22565692(+)
						
						Potential amino acid sequence
						
							MTFSNFSNFSGGTTGRLSTTTTLANPISSSIGSSIRSKSSSSMSVSRVAGLVATICDQIFLTRG
EVNQFHLCMSKSH*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22566801-22565692(+)
Potential amino acid sequence	MTFSNFSNFSGGTTGRLSTTTTLANPISSSIGSSIRSKSSSSMSVSRVAGLVATICDQIFLTRG EVNQFHLCMSKSH*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0569200_circ_g.5

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