Plant Circular RNA Database

Detail information of Os07g0644550_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os07g0644550_circ_g.3
					
						ID in PlantcircBase
						osa_circ_034993
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 26847087-26848618  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0644550						
					
						Parent gene annotation
						
							Hypothetical protein. (Os07t0644550-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0644550_circ_g.2 Os07g0644550_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0644600-01:3
Os07t0644600-01:3
Os07t0644550-00:3

General Information
CircRNA Name	Os07g0644550_circ_g.3
ID in PlantcircBase	osa_circ_034993
Alias	NA
Organism	Oryza sativa
Position	chr7: 26847087-26848618 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0644550
Parent gene annotation	Hypothetical protein. (Os07t0644550-00)
Parent gene strand	-
Alternative splicing	Os07g0644550_circ_g.2 Os07g0644550_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0644600-01:3 Os07t0644600-01:3 Os07t0644550-00:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATGATGTGCTTAGGATGAAATTCCTACTTGCTACTGTATGTGAATCTGCTCGACTTTTGCCTG
CTGGACCTCTTCTCCAGAGATGTTCTTTGCAACAAGgctacctatcgaagttacatggcagtta
tggcccagttgttcgactgtggctcggaccctctcaactgcttgtctcagttaaagattctagg
gtaattaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 993
Transcript exons: 26847087-26847286,26847446-26848087,26848468-26848618
GCTACCTATCGAAGTTACATGGCAGTTATGGCCCAGTTGTTCGACTGTGGCTCGGACCCTCTCA
ACTGCTTGTCTCAGTTAAAGATTCTAGGGTAATTAAAGAGTTGCTAACAAAGGCTGAAGATAAG
TTGCCGTTGACTGGGAAGACATATAATTTGGCTTGTGGAAAACTTGGTCTGTTCATTTCCTCGT
TCGAGAAGGTCAAAAGTAGGAGGGAATCACTGAAGTCATTCCTGGATGAAAAACTTAGTGTTGG
TACTGGTGGAAGTTCCTTCAAGATCATTCAAATTGTCCTTGATAGAGTTGACTCCATTATGGCC
AGGGATTTTCTGGACTGCAGATATTTTTCCCAACACATGGCATTTAACATTGTTGGCTCGGCTC
TTTTTGGTGATGCTTTCTTTGATTGGTCTGATGCTTCTGCCTATGAGGAGCTGATGATGACGGT
TGCAAAGGATGCTTGTTTCTGGGCTTCTTATGCAGTTCCCCCATTTTGGAAACCTGATTATAGG
AGGTACAGAACACTATGTGCTCGATTGAAGCTATTAACACAAGGCATCGTTGCAAAATCAAGAA
ACCAAAATGGTGTACTTAGCCTTATTGATCTGAGTTCCTGTCAGAGAAGTGAAAGGATGATAAA
AGATCCATGCAGAGGCTTTTCTCTGCTTGATGGTGTGATTTCAAGTCGTTGTCTCAACGAGGCA
GCTGAAGGGCCTCTCAGCTCAGAAGAAGAAATATGTGGTAACATTATGGGTTTAATGTTGCATG
GAATTTCCACGTGTGCTAACCTAATTGGCAACATCCTAACAAGGCTTGCCTTGTACCCAAACTT
GCAATGCCAGCTGCATTCGGAGATAGTTTCAGGTCACAGTGAATCATCTGAGCTTAAGATAGAT
GATGTGCTTAGGATGAAATTCCTACTTGCTACTGTATGTGAATCTGCTCGACTTTTGCCTGCTG
GACCTCTTCTCCAGAGATGTTCTTTGCAACAAG
						
					

						Genomic sequence
						
							GCTACCTATCGAAGTTACATGGCAGTTATGGCCCAGTTGTTCGACTGTGGCTCGGACCCTCTCA
ACTGCTTGTCTCAGTTAAAGATTCTAGGGTAATTAAAGAGTTGCTAACAAAGGCTGAAGATAAG
TTGCCGTTGACTGGGAAGACATATAATTTGGCTTGTGGAAAACTTGGTCTGTTCATTTCCTCGT
TCGAGAAGGTTTGTGTCTCAAATGTGATAAAATACCATATGCAGTCTGCTGTATTAATTTGTCT
CGTTTGCCTTGCATATTTTTGGTGATAGTTATCATTCAGATGGCACATACAATTGCTGATTCAT
CTCCGCTATTCTTTTAATGCTTTTCTCCTGCATTTTCAGGTCAAAAGTAGGAGGGAATCACTGA
AGTCATTCCTGGATGAAAAACTTAGTGTTGGTACTGGTGGAAGTTCCTTCAAGATCATTCAAAT
TGTCCTTGATAGAGTTGACTCCATTATGGCCAGGGATTTTCTGGACTGCAGATATTTTTCCCAA
CACATGGCATTTAACATTGTTGGCTCGGCTCTTTTTGGTGATGCTTTCTTTGATTGGTCTGATG
CTTCTGCCTATGAGGAGCTGATGATGACGGTTGCAAAGGATGCTTGTTTCTGGGCTTCTTATGC
AGTTCCCCCATTTTGGAAACCTGATTATAGGAGGTACAGAACACTATGTGCTCGATTGAAGCTA
TTAACACAAGGCATCGTTGCAAAATCAAGAAACCAAAATGGTGTACTTAGCCTTATTGATCTGA
GTTCCTGTCAGAGAAGTGAAAGGATGATAAAAGATCCATGCAGAGGCTTTTCTCTGCTTGATGG
TGTGATTTCAAGTCGTTGTCTCAACGAGGCAGCTGAAGGGCCTCTCAGCTCAGAAGAAGAAATA
TGTGGTAACATTATGGGTTTAATGTTGCATGGAATTTCCACGTGTGCTAACCTAATTGGCAACA
TCCTAACAAGGCTTGCCTTGTACCCAAACTTGCAATGCCAGGTACACATTATTTGCTTTATTTC
TCTGTTGCAAACAATCCTGGTTGCTCTTTATGTGATGATTGGTGCTTGTTACTGCTTTTTTGTT
TCAATAGGTAGTTCCTTTACCTAAACAGATCTCTCCCAGTTATATATATGTTACAATGTTGCAT
ATTGTCCAGTATTGCTCCTTGTTCTTTGCTTATGCAATATATTTCTGCCCTTCATGTAGTATCA
TGATAGTCTCAAGTTATTCTGGTTTTGTTATAGCATTCCTTTGTTAATTTGACAAGGCTGAACT
TGTTTCTTCATTTATCTTCGTTGACATGGAAACTGCTTCTTTCAGGCGGTTGCATTGTATTTAT
GCTGTTTCTCTGACTTACATGTGCTGTTTTCCTACAGCTGCATTCGGAGATAGTTTCAGGTCAC
AGTGAATCATCTGAGCTTAAGATAGATGATGTGCTTAGGATGAAATTCCTACTTGCTACTGTAT
GTGAATCTGCTCGACTTTTGCCTGCTGGACCTCTTCTCCAGAGATGTTCTTTGCAACAAG
						
					

			
		

Sequences
Splice junction sequence	GATGATGTGCTTAGGATGAAATTCCTACTTGCTACTGTATGTGAATCTGCTCGACTTTTGCCTG CTGGACCTCTTCTCCAGAGATGTTCTTTGCAACAAGgctacctatcgaagttacatggcagtta tggcccagttgttcgactgtggctcggaccctctcaactgcttgtctcagttaaagattctagg gtaattaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 993 Transcript exons: 26847087-26847286,26847446-26848087,26848468-26848618 GCTACCTATCGAAGTTACATGGCAGTTATGGCCCAGTTGTTCGACTGTGGCTCGGACCCTCTCA ACTGCTTGTCTCAGTTAAAGATTCTAGGGTAATTAAAGAGTTGCTAACAAAGGCTGAAGATAAG TTGCCGTTGACTGGGAAGACATATAATTTGGCTTGTGGAAAACTTGGTCTGTTCATTTCCTCGT TCGAGAAGGTCAAAAGTAGGAGGGAATCACTGAAGTCATTCCTGGATGAAAAACTTAGTGTTGG TACTGGTGGAAGTTCCTTCAAGATCATTCAAATTGTCCTTGATAGAGTTGACTCCATTATGGCC AGGGATTTTCTGGACTGCAGATATTTTTCCCAACACATGGCATTTAACATTGTTGGCTCGGCTC TTTTTGGTGATGCTTTCTTTGATTGGTCTGATGCTTCTGCCTATGAGGAGCTGATGATGACGGT TGCAAAGGATGCTTGTTTCTGGGCTTCTTATGCAGTTCCCCCATTTTGGAAACCTGATTATAGG AGGTACAGAACACTATGTGCTCGATTGAAGCTATTAACACAAGGCATCGTTGCAAAATCAAGAA ACCAAAATGGTGTACTTAGCCTTATTGATCTGAGTTCCTGTCAGAGAAGTGAAAGGATGATAAA AGATCCATGCAGAGGCTTTTCTCTGCTTGATGGTGTGATTTCAAGTCGTTGTCTCAACGAGGCA GCTGAAGGGCCTCTCAGCTCAGAAGAAGAAATATGTGGTAACATTATGGGTTTAATGTTGCATG GAATTTCCACGTGTGCTAACCTAATTGGCAACATCCTAACAAGGCTTGCCTTGTACCCAAACTT GCAATGCCAGCTGCATTCGGAGATAGTTTCAGGTCACAGTGAATCATCTGAGCTTAAGATAGAT GATGTGCTTAGGATGAAATTCCTACTTGCTACTGTATGTGAATCTGCTCGACTTTTGCCTGCTG GACCTCTTCTCCAGAGATGTTCTTTGCAACAAG
Genomic sequence	GCTACCTATCGAAGTTACATGGCAGTTATGGCCCAGTTGTTCGACTGTGGCTCGGACCCTCTCA ACTGCTTGTCTCAGTTAAAGATTCTAGGGTAATTAAAGAGTTGCTAACAAAGGCTGAAGATAAG TTGCCGTTGACTGGGAAGACATATAATTTGGCTTGTGGAAAACTTGGTCTGTTCATTTCCTCGT TCGAGAAGGTTTGTGTCTCAAATGTGATAAAATACCATATGCAGTCTGCTGTATTAATTTGTCT CGTTTGCCTTGCATATTTTTGGTGATAGTTATCATTCAGATGGCACATACAATTGCTGATTCAT CTCCGCTATTCTTTTAATGCTTTTCTCCTGCATTTTCAGGTCAAAAGTAGGAGGGAATCACTGA AGTCATTCCTGGATGAAAAACTTAGTGTTGGTACTGGTGGAAGTTCCTTCAAGATCATTCAAAT TGTCCTTGATAGAGTTGACTCCATTATGGCCAGGGATTTTCTGGACTGCAGATATTTTTCCCAA CACATGGCATTTAACATTGTTGGCTCGGCTCTTTTTGGTGATGCTTTCTTTGATTGGTCTGATG CTTCTGCCTATGAGGAGCTGATGATGACGGTTGCAAAGGATGCTTGTTTCTGGGCTTCTTATGC AGTTCCCCCATTTTGGAAACCTGATTATAGGAGGTACAGAACACTATGTGCTCGATTGAAGCTA TTAACACAAGGCATCGTTGCAAAATCAAGAAACCAAAATGGTGTACTTAGCCTTATTGATCTGA GTTCCTGTCAGAGAAGTGAAAGGATGATAAAAGATCCATGCAGAGGCTTTTCTCTGCTTGATGG TGTGATTTCAAGTCGTTGTCTCAACGAGGCAGCTGAAGGGCCTCTCAGCTCAGAAGAAGAAATA TGTGGTAACATTATGGGTTTAATGTTGCATGGAATTTCCACGTGTGCTAACCTAATTGGCAACA TCCTAACAAGGCTTGCCTTGTACCCAAACTTGCAATGCCAGGTACACATTATTTGCTTTATTTC TCTGTTGCAAACAATCCTGGTTGCTCTTTATGTGATGATTGGTGCTTGTTACTGCTTTTTTGTT TCAATAGGTAGTTCCTTTACCTAAACAGATCTCTCCCAGTTATATATATGTTACAATGTTGCAT ATTGTCCAGTATTGCTCCTTGTTCTTTGCTTATGCAATATATTTCTGCCCTTCATGTAGTATCA TGATAGTCTCAAGTTATTCTGGTTTTGTTATAGCATTCCTTTGTTAATTTGACAAGGCTGAACT TGTTTCTTCATTTATCTTCGTTGACATGGAAACTGCTTCTTTCAGGCGGTTGCATTGTATTTAT GCTGTTTCTCTGACTTACATGTGCTGTTTTCCTACAGCTGCATTCGGAGATAGTTTCAGGTCAC AGTGAATCATCTGAGCTTAAGATAGATGATGTGCTTAGGATGAAATTCCTACTTGCTACTGTAT GTGAATCTGCTCGACTTTTGCCTGCTGGACCTCTTCTCCAGAGATGTTCTTTGCAACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.24960761

Conservation Information
Conserved circRNAs	NA
PMCS	0.24960761

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26848603-26847165(+)
26847561-26848615(+)
						
						Potential amino acid sequence
						
							MFFATRLPIEVTWQLWPSCSTVARTLSTACLS*(+)
MARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELMMTVAKDACFWASYAVPPFWKPD
YRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSERMIKDPCRGFSLLDGVISSRCLN
EAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQLHSEIVSGHSESSELK
IDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHGSYGPVVRLWLGPSQLLVSVKDS
RVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRRESLKSFLDEKLSVGTGGSSFKI
IQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELMMTVAKDACFWA
SYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSERMIKDPCRGFSL
LDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQLHSEI
VSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHGSYGPVVRLWLG
PSQLLVSVKDSRVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRRESLKSFLDEKL
SVGTGGSSFKIIQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELM
MTVAKDACFWASYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSER
MIKDPCRGFSLLDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALY
PNLQCQLHSEIVSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHG
SYGPVVRLWLGPSQLLVSVKDSRVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRR
ESLKSFLDEKLSVGTGGSSFKIIQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFD
WSDASAYEELMMTVAKDACFWASYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSL
IDLSSCQRSERMIKDPCRGFSLLDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANL
IGNILTRLALYPNLQCQLHSEIVSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCS
LQQ(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26848603-26847165(+) 26847561-26848615(+)
Potential amino acid sequence	MFFATRLPIEVTWQLWPSCSTVARTLSTACLS*(+) MARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELMMTVAKDACFWASYAVPPFWKPD YRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSERMIKDPCRGFSLLDGVISSRCLN EAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQLHSEIVSGHSESSELK IDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHGSYGPVVRLWLGPSQLLVSVKDS RVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRRESLKSFLDEKLSVGTGGSSFKI IQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELMMTVAKDACFWA SYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSERMIKDPCRGFSL LDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQLHSEI VSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHGSYGPVVRLWLG PSQLLVSVKDSRVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRRESLKSFLDEKL SVGTGGSSFKIIQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFDWSDASAYEELM MTVAKDACFWASYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSLIDLSSCQRSER MIKDPCRGFSLLDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALY PNLQCQLHSEIVSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQGYLSKLHG SYGPVVRLWLGPSQLLVSVKDSRVIKELLTKAEDKLPLTGKTYNLACGKLGLFISSFEKVKSRR ESLKSFLDEKLSVGTGGSSFKIIQIVLDRVDSIMARDFLDCRYFSQHMAFNIVGSALFGDAFFD WSDASAYEELMMTVAKDACFWASYAVPPFWKPDYRRYRTLCARLKLLTQGIVAKSRNQNGVLSL IDLSSCQRSERMIKDPCRGFSLLDGVISSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANL IGNILTRLALYPNLQCQLHSEIVSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCS LQQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0644550_circ_g.3

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