Detail information of BGIOSGA016362_circ_g.2


General Information
CircRNA Name BGIOSGA016362_circ_g.2
ID in PlantcircBase osi_circ_014342
Alias Chr04:20906497_20906931(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18231784-18232218  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016362
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AC-CA
Number of exons covered BGIOSGA016362-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATTCAAATGTTTGATTTGTTACCATTGTTTCCTATCTGAGTCATTGCCATAGCTTTGGCCT
ATTATCTAAAAATTTTGTAGTACTCTAAATAGACTTggtaatatatatttttccaccatggaat
tactggaatgatgtagaaaaaatcaataggatttcatgatcttcttgtgctgtgatttttcttc
tctcaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATATATATTTTTCCACCATGGAATTACTGGAATGATGTAGAAAAAATCAATAGGATTTCA
TGATCTTCTTGTGCTGTGATTTTTCTTCTCTCAAATTCCTGTCCACTCCCGTAATACTGAGTTA
TATTTGAATATAGATAGCTTGGATCTATGTCACGGCATATTTCATAGTAAACATGGGTGCTTAT
CATGTAGGCAAAGTATTTATGTTTCCGCATATGACAGCATAGTACATGACATTCGAACCAAGTC
TTGGGTGACGATAAAATTGTATATAGATAATTCCATTCTACCATATACTGCTGATCACAATTAT
TTCATTGAAACATTTAAAATTCAAATGTTTGATTTGTTACCATTGTTTCCTATCTGAGTCATTG
CCATAGCTTTGGCCTATTATCTAAAAATTTTGTAGTACTCTAAATAGACTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021