Detail information of BGIOSGA031233_circ_g.1


General Information
CircRNA Name BGIOSGA031233_circ_g.1
ID in PlantcircBase osi_circ_018753
Alias Chr09:23451783_23452205(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 20762293-20762715  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031233
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA031233-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACTTCAGGAAGTAAAAGATTTATTGGAGTATGCTGCTGAGAACAATACCTCTTTAACTCGTA
TAATGTTGGATAATATGGTTGTCCCTCTTGGTAACGgaattggcttatttgatatggttatgat
aaaggataatcatatttctgttgctgggggcataacaaatgcaatgaaatttgttgatcgattc
ttggcgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATTGGCTTATTTGATATGGTTATGATAAAGGATAATCATATTTCTGTTGCTGGGGGCATAAC
AAATGCAATGAAATTTGTTGATCGATTCTTGGCGAAGGAAAAGCTTGCACTTCCTGTTGAGGTA
TCATCTAGTGATTACATATATCACATCTAAACGATGCACTTATGTTTGCATGTGATTCTGTTTT
AGCTTTACATTTTTCTCTCCAGGCTCTTTAGTTAGAAATGTGCTTACGTTCTTGTTTAAAAAAA
AAAAGCTAAAATGAGAATGTGCATATGTTGACAGTGATTACATTTTGTGAATCAGGTTGAGACA
AGAACACTTCAGGAAGTAAAAGATTTATTGGAGTATGCTGCTGAGAACAATACCTCTTTAACTC
GTATAATGTTGGATAATATGGTTGTCCCTCTTGGTAACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021