Detail information of AT1G73885_circ_g.2


General Information
CircRNA Name AT1G73885_circ_g.2
ID in PlantcircBase ath_circ_010056
Alias 1:27787281-27787592
Organism Arabidpsis thaliana
Position chr1: 27787281-27787592  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G73885
Parent gene annotation unknown protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G73885.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCGATTCAATCTCGTGACCTTCTTGATGAAGCAGAGAGTTCAAACTCTGAAGATGTGTTTGA
GTCCAACCCAACAGAAGTGGCTCCTAGTTTGGAATAgtttcttcgttcagtacttgtgggcttt
cggaatccttttcgcggtaaatttctgtacttttcagttgctttataacaattctccaattttg
aagttaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTCGCGGTAAATTTCTGTACTTTTCA
GTTGCTTTATAACAATTCTCCAATTTTGAAGTTAAACCAATCAATTCACTATGGTTCAAAATGT
TGTAACAGCTAATCTCTGGTGGACTTGCGGCGGGGACGTATAACGAAGGTGCGACGGATTTCAA
GGAGACGCCAGTATATAAAGAGGCGATTCAATCTCGTGACCTTCTTGATGAAGCAGAGAGTTCA
AACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCTCCTAGTTTGGAATA
Conservation Information
Conserved circRNAs NA
PMCS 0.168039129
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020