Detail information of BGIOSGA017301_circ_g.3


General Information
CircRNA Name BGIOSGA017301_circ_g.3
ID in PlantcircBase osi_circ_014970
Alias Chr04:34423235_34423802(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 32913147-32913714  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA017301
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017301_circ_g.1 BGIOSGA017301_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA017301-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGTTCAAAAATTGCTGCAGAAATTGAGACATCACCAATGCCCTGTCTTGTTACTGAAGCAAC
TAATGCTGTTTGTGGTGCTGATTTTACTGTCTGGCTgtcattaaagcaagtgttggaagaaatc
acacagtggttgtaaccgatgacgggaagtcattctcatttggtcacaataaacacggacagtt
gggtacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATTAAAGCAAGTGTTGGAAGAAATCACACAGTGGTTGTAACCGATGACGGGAAGTCATTCT
CATTTGGTCACAATAAACACGGACAGTTGGGTACAGGCTCCCTAAGGAATGGTATGTACCTTTG
GTTCATTTTTAACTCACTGACATCAGTAGTACACCAAATACATGTCCTGCAGACAAATCATTCT
GTCTTTGGAAAAGTCTGGGTATATCTGCTTCGCGGATGGTTGATTCTTTTTTGGTAATGCTTCC
ATGTGTGATTTGTCTGTTTAGACATTGATGCTGCAATGCAGTGTTTCACGGGGAGTTTTTCATA
TTCTTATAATATATGCTAACAAATGTTGGACATTTCGTAAATTCTTCCTAGCTCTGCGACACAA
TGTGTGATAACTGATAAACTTATTTTACTTGTTTTGGGCAGCTTATTTCCCCTTTATTTATTAC
ATTATTTGATTCTTGTTCCTTTGGTTCAAAAATTGCTGCAGAAATTGAGACATCACCAATGCCC
TGTCTTGTTACTGAAGCAACTAATGCTGTTTGTGGTGCTGATTTTACTGTCTGGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021