Detail information of Zm00001d013013_circ_g.3


General Information
CircRNA Name Zm00001d013013_circ_g.3
ID in PlantcircBase zma_circ_004779
Alias shoot_test_circ_000233
Organism Zea mays
Position chr5: 3207847-3208271  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d013013
Parent gene annotation Magnesium-chelatase subunit ChlD chloroplastic
Parent gene strand -
Alternative splicing Zm00001d013013_circ_g.1 Zm00001d013013_circ_g.2
Support reads NA
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d013013_T005:2
Zm00001d013013_T007:2
Zm00001d013013_T006:2
Zm00001d013013_T002:2
Zm00001d013013_T001:2
Zm00001d013013_T003:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTAACGGCCCCTATCTTCTGAGAAGATGACATTCTTTGCTCGCCCAGCTTTTCCACGTCGTC
TCTGTGCTTGCTGGGCAAAGAAAAGAAGTTTGTCATcgttctttctctctgcgcagtttttggt
atggtgcagctgctctaagcgtggcatcaacagctaacctccttactggaccctacaacacgaa
taattgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTCTTTCTCTCTGCGCAGTTTTTGGTATGGTGCAGCTGCTCTAAGCGTGGCATCAACAGCTA
ACCTCCTTACTGGACCCTACAACACGAATAATTGTTTAGACTGGGGGACATTTTGTGAAAGGGC
ACCAATCAAAAGGTCAGTTAGGAATACAAGGGAAGAATGCAGTAGAACTAAATAACAAAAACAT
ACTAACCCAGCTCTTTAGGGCTTGTACGAGTCTCTTTGACTCTTTTTCTTCTTAATATAATGAT
ACGCGGTTCTCTTGTGCGTTTGAGGAAGAAAAAACATACTAACAGGGTACCTTAGGAAGCATAG
GCTTTATGTAACGGCCCCTATCTTCTGAGAAGATGACATTCTTTGCTCGCCCAGCTTTTCCACG
TCGTCTCTGTGCTTGCTGGGCAAAGAAAAGAAGTTTGTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.159445902
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018