Plant Circular RNA Database

Detail information of Os12g0433500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os12g0433500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_011385
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 14027485-14028446  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							Os12g0433500						
					
						Parent gene annotation
						
							Similar to FU (FUSED); protein serine/threonine kinase. (Os12t04
33500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0433500_circ_g.1 Os12g0433500_circ_g.3 Os12g0433500_circ_g.4 Os12g0433500_circ_g.5 Os12g0433500_circ_g.6 Os12g0433500_circ_g.7 Os12g0433500_circ_g.8 Os12g0433500_circ_g.9 						
					
						Support reads
						2
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0433500-01:4

General Information
CircRNA Name	Os12g0433500_circ_g.2
ID in PlantcircBase	osa_circ_011385
Alias	NA
Organism	Oryza sativa
Position	chr12: 14027485-14028446 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	Os12g0433500
Parent gene annotation	Similar to FU (FUSED); protein serine/threonine kinase. (Os12t04 33500-01)
Parent gene strand	-
Alternative splicing	Os12g0433500_circ_g.1 Os12g0433500_circ_g.3 Os12g0433500_circ_g.4 Os12g0433500_circ_g.5 Os12g0433500_circ_g.6 Os12g0433500_circ_g.7 Os12g0433500_circ_g.8 Os12g0433500_circ_g.9
Support reads	2
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0433500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACGATACCCAACCATTTTGGCCACTATGGCCAAGGGCCTTGATAGATCTTCCATGTTAACATG
ATCAAAGCAGTGAAGTATACACCCGGGAACACTAACctgaattgcgccctgggagacaatatct
tcacagagtatgttagagttcctcactaggttactcaacgctcctgcagcattgcccttggttt
tatcctcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 648
Transcript exons: 14027485-14027673,14027799-14027879,14027946-14028089,14
028213-14028446
CTGAATTGCGCCCTGGGAGACAATATCTTCACAGAGTATGTTAGAGTTCCTCACTAGGTTACTC
AACGCTCCTGCAGCATTGCCCTTGGTTTTATCCTCCTCAGGTGCAAGAAGTAGCTTGGTGAGTT
GAGGAATGGACCGTCTAAGTTCTTCATATAGCATGTCGTTGTGATAAGCAGCATTTCCTACAGC
AAAGCATGCAAACTTCCGAGTGCGCTTGTCCGGGTCAGAGCATCTGTCAACTACCAGCTCAATT
ACCTTATTTGTTGCAAGTGAACTGTAGAAGTAGGAACTGTGGCGGCACATGTTGCCAATTGCAC
TGCAAGCTTTTGCTCTTAAATCAGGGTCCTCATTTGATAGAAAGTTCTTTAAATAACCAACCAT
GCCTGCTTTATCAATTGGTTCATAAAAGTCCTTTGACATCCGGGCAAGATCAGAAACTATCATG
AGGAAGTCAAGCAATGTCTCTTTAGCAATAGGGCCTTTCAGTAATTTTTCAACCCTGCTATGAT
TTAGTAAACCTTCTCTAAGAAGCTGAGAAGCAAGTGGACGATACCCAACCATTTTGGCCACTAT
GGCCAAGGGCCTTGATAGATCTTCCATGTTAACATGATCAAAGCAGTGAAGTATACACCCGGGA
ACACTAAC
						
					

						Genomic sequence
						
							CTGAATTGCGCCCTGGGAGACAATATCTTCACAGAGTATGTTAGAGTTCCTCACTAGGTTACTC
AACGCTCCTGCAGCATTGCCCTTGGTTTTATCCTCCTCAGGTGCAAGAAGTAGCTTGGTGAGTT
GAGGAATGGACCGTCTAAGTTCTTCATATAGCATGTCGTTGTGATAAGCAGCATTTCCTACCTG
AAATGGTAAGGATAAATCAGATTATGAGGTTAAACACATTAACAACACACTATTAGCACGATGC
TGGTCTCCTGTTGATTGGTAAAATGCAACAAATATACAAGATCGCTTTAAAAACTTACAGCAAA
GCATGCAAACTTCCGAGTGCGCTTGTCCGGGTCAGAGCATCTGTCAACTACCAGCTCAATTACC
TTATTTGTTGCCTGTTCGCGGAAAACAAGGTTAAATATCTCTACAATAGTCCAAATGTGAATAA
AATATTTTCTTACAAGTGAACTGTAGAAGTAGGAACTGTGGCGGCACATGTTGCCAATTGCACT
GCAAGCTTTTGCTCTTAAATCAGGGTCCTCATTTGATAGAAAGTTCTTTAAATAACCAACCATG
CCTGCTTTATCAATTGGTTCATAAAAGTCCTGGATACAAGCACAATTTGTGTTAATAAGTATTC
ATAGCCAAGATTCAACATTTCCATTTAGTAGCATATTTCTAGGGCACCTTGGAAATATGCCAAA
AACGAAAGCCAATAAATGACAAACCTTTGACATCCGGGCAAGATCAGAAACTATCATGAGGAAG
TCAAGCAATGTCTCTTTAGCAATAGGGCCTTTCAGTAATTTTTCAACCCTGCTATGATTTAGTA
AACCTTCTCTAAGAAGCTGAGAAGCAAGTGGACGATACCCAACCATTTTGGCCACTATGGCCAA
GGGCCTTGATAGATCTTCCATGTTAACATGATCAAAGCAGTGAAGTATACACCCGGGAACACTA
AC
						
					

			
		

Sequences
Splice junction sequence	GACGATACCCAACCATTTTGGCCACTATGGCCAAGGGCCTTGATAGATCTTCCATGTTAACATG ATCAAAGCAGTGAAGTATACACCCGGGAACACTAACctgaattgcgccctgggagacaatatct tcacagagtatgttagagttcctcactaggttactcaacgctcctgcagcattgcccttggttt tatcctcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 648 Transcript exons: 14027485-14027673,14027799-14027879,14027946-14028089,14 028213-14028446 CTGAATTGCGCCCTGGGAGACAATATCTTCACAGAGTATGTTAGAGTTCCTCACTAGGTTACTC AACGCTCCTGCAGCATTGCCCTTGGTTTTATCCTCCTCAGGTGCAAGAAGTAGCTTGGTGAGTT GAGGAATGGACCGTCTAAGTTCTTCATATAGCATGTCGTTGTGATAAGCAGCATTTCCTACAGC AAAGCATGCAAACTTCCGAGTGCGCTTGTCCGGGTCAGAGCATCTGTCAACTACCAGCTCAATT ACCTTATTTGTTGCAAGTGAACTGTAGAAGTAGGAACTGTGGCGGCACATGTTGCCAATTGCAC TGCAAGCTTTTGCTCTTAAATCAGGGTCCTCATTTGATAGAAAGTTCTTTAAATAACCAACCAT GCCTGCTTTATCAATTGGTTCATAAAAGTCCTTTGACATCCGGGCAAGATCAGAAACTATCATG AGGAAGTCAAGCAATGTCTCTTTAGCAATAGGGCCTTTCAGTAATTTTTCAACCCTGCTATGAT TTAGTAAACCTTCTCTAAGAAGCTGAGAAGCAAGTGGACGATACCCAACCATTTTGGCCACTAT GGCCAAGGGCCTTGATAGATCTTCCATGTTAACATGATCAAAGCAGTGAAGTATACACCCGGGA ACACTAAC
Genomic sequence	CTGAATTGCGCCCTGGGAGACAATATCTTCACAGAGTATGTTAGAGTTCCTCACTAGGTTACTC AACGCTCCTGCAGCATTGCCCTTGGTTTTATCCTCCTCAGGTGCAAGAAGTAGCTTGGTGAGTT GAGGAATGGACCGTCTAAGTTCTTCATATAGCATGTCGTTGTGATAAGCAGCATTTCCTACCTG AAATGGTAAGGATAAATCAGATTATGAGGTTAAACACATTAACAACACACTATTAGCACGATGC TGGTCTCCTGTTGATTGGTAAAATGCAACAAATATACAAGATCGCTTTAAAAACTTACAGCAAA GCATGCAAACTTCCGAGTGCGCTTGTCCGGGTCAGAGCATCTGTCAACTACCAGCTCAATTACC TTATTTGTTGCCTGTTCGCGGAAAACAAGGTTAAATATCTCTACAATAGTCCAAATGTGAATAA AATATTTTCTTACAAGTGAACTGTAGAAGTAGGAACTGTGGCGGCACATGTTGCCAATTGCACT GCAAGCTTTTGCTCTTAAATCAGGGTCCTCATTTGATAGAAAGTTCTTTAAATAACCAACCATG CCTGCTTTATCAATTGGTTCATAAAAGTCCTGGATACAAGCACAATTTGTGTTAATAAGTATTC ATAGCCAAGATTCAACATTTCCATTTAGTAGCATATTTCTAGGGCACCTTGGAAATATGCCAAA AACGAAAGCCAATAAATGACAAACCTTTGACATCCGGGCAAGATCAGAAACTATCATGAGGAAG TCAAGCAATGTCTCTTTAGCAATAGGGCCTTTCAGTAATTTTTCAACCCTGCTATGATTTAGTA AACCTTCTCTAAGAAGCTGAGAAGCAAGTGGACGATACCCAACCATTTTGGCCACTATGGCCAA GGGCCTTGATAGATCTTCCATGTTAACATGATCAAAGCAGTGAAGTATACACCCGGGAACACTA AC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.190404626

Conservation Information
Conserved circRNAs	NA
PMCS	0.190404626

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14028409-14027538(+)
14028403-14027487(-)
						
						Potential amino acid sequence
						
							MIKAVKYTPGNTNLNCALGDNIFTEYVRVPH*(+)
MEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKD
FYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPD
KRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCE
DIVSQGAIQVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLK
GPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHS
SYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPE
EDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQVSVPGCILHCFDHVNMEDLSRPLAIVAKMVG
YRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKN
FLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAY
HNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQVSVPGCI
LHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVS
DLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELV
VDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLV
RNSNILCEDIVSQGAIQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14028409-14027538(+) 14028403-14027487(-)
Potential amino acid sequence	MIKAVKYTPGNTNLNCALGDNIFTEYVRVPH*(+) MEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKD FYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPD KRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCE DIVSQGAIQVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLK GPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHS SYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPE EDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQVSVPGCILHCFDHVNMEDLSRPLAIVAKMVG YRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKN FLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAY HNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQVSVPGCI LHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAKETLLDFLMIVS DLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYSSLATNKVIELV VDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTKGNAAGALSNLV RNSNILCEDIVSQGAIQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0433500_circ_g.2

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