Detail information of Zm00001d048783_circ_g.1


General Information
CircRNA Name Zm00001d048783_circ_g.1
ID in PlantcircBase zma_circ_007957
Alias zma_circ_0001796
Organism Zea mays
Position chr4: 5481540-5491110  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d048783
Parent gene annotation Beta-galactosidase 5
Parent gene strand +
Alternative splicing Zm00001d048783_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d048783_T006:5
Zm00001d048783_T005:7
Zm00001d048783_T001:12
Zm00001d048783_T003:10
Zm00001d048783_T004:10
Zm00001d048783_T002:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCTGAAAACTTTCTACAAGGTGGCGGCAAGCCTCTGTCTCTCAGTGTGCAGTCTGCTGGTC
ATGCCTTGCATGTCTTTGTCAATGGACAGCTTCAAGgttctgcatatggtactagggaagattg
aagaatcaaatacaatggcaatgctaaccttcgagccggtactaacaaaatttccatgctgagt
gttgcctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1408
Transcript exons: 5481540-5481605,5481733-5481843,5487983-5488057,5488154-
5488273,5488716-5488859,5489277-5489365,5489483-5489617,
5489840-5489927,5490130-5490255,5490326-5490487,5490610-
5490788,5490998-5491110
GTTCTGCATATGGTACTAGGGAAGATTGAAGAATCAAATACAATGGCAATGCTAACCTTCGAGC
CGAATGTTGGAGTGCATTATGAGACGTGGAACACTGGTGTTGGTGGTCCTGTTGTGCTTCATAG
GCTGGATGAAGGTTCACGAGACCTTACTTGGCAGACTTGGTCCTATCAGTGGCTTCCCAGTTTG
GTTGAAGTATGTACCGGACTACCGGGCATCAGCTTCAGGACAGACAACGAACCTTTCAAGATGG
CCATGCAGGGTTTCACTCAGAAAATTGTGGGAATGATGAAGAGCGAAAACCTCTTTGCATCCCA
AGGTGTCCCAATTATCCTCTCTCAGGCAAGTATAATATTTTCCTTAGGTTTGATTGAGAATGAA
TACGGGCCAGAAGGCAGGGAGTTTCGTCCCGCAGGTCAGGCATATATCAACAAGGCAGCAAAGA
TGGCAGTCGGATTGGGTACTGGTGTGCCGTGGGTGATGTGGAAGGAGGAGGATGCACCTGATCC
AGTGATCAATGCATGCAATGGTTTCTACTGTGATGCATTTTCTCCTAACAAACCTTACAAGCCC
ACAATGTGGACTGAAGCTTGGAGTGGCTACAAGTGTGCCCTAACAAATGTCCACAACATTTTAG
GTTCACGGAATTTGTTGGGACCATCCGCCAACGGCCGGTTGAAGATCTTGCATTTGCTCGATTT
GTACAAAAGGGTGGTTCTTTTATCAATTACTACATGTACCATGGAGGAACAAATTTTGGGCGCA
CTGCTGGGGGTCCCTTCATCACAACAAGCTATGATTATGATGCTCCAATTGATGAATATGGACT
TTTTAGAGAACCAAAGCACAGTCATCTTAAAGAACTCCACAGAGCTGTTAAGTTATGCGAGCAG
GCTTTGGTTTCTGTTGACCCAGCAATTACTACCCTTGTACCATGCAAGAGGTATGCTGGCCCAC
GTCTTCCAATCTCCATCTGGTTGTGCAGCTTTCCTTGCAAACTACAATTCTAACTCCTATGCGA
ATGTTGTATTCAACAATGAGCAATACAGCCTACCACATTGGTCGATTAGCATCCTTCCTGATTG
CAAAAATGTTGTTTTTAACAGTGTCACAGTTGGTGTTCAGACATCTCAGATGCAAATGTGTGGA
GATGATGCCTCATCAATGACGTGGAAGAGGTATGATGAGGAGGTTTATTCTCTGGCAGCTGCTC
CATTGCTCACCACGACTAGTTTGCTTGAGCAGCTTAATGTCACGAGAGACAACAGTGATTATTT
GTGGTACATCACCAGTGTTGACATAAGCTCATCTGAAAACTTTCTACAAGGTGGCGGCAAGCCT
CTGTCTCTCAGTGTGCAGTCTGCTGGTCATGCCTTGCATGTCTTTGTCAATGGACAGCTTCAAG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.631859355
Functional Information
Coding potential Y
Potential coding position 5481550-5481565(+)
5491076-5481565(+)
Potential amino acid sequence MVLGKIEESNTMAMLTFEPNVGVHYETWNTGVGGPVVLHRLDEGSRDLTWQTWSYQWLPSLVEV
CTGLPGISFRTDNEPFKMAMQGFTQKIVGMMKSENLFASQGVPIILSQASIIFSLGLIENEYGP
EGREFRPAGQAYINKAAKMAVGLGTGVPWVMWKEEDAPDPVINACNGFYCDAFSPNKPYKPTMW
TEAWSGYKCALTNVHNILGSRNLLGPSANGRLKILHLLDLYKRVVLLSITTCTMEEQILGALLG
VPSSQQAMIMMLQLMNMDFLENQSTVILKNSTELLSYASRLWFLLTQQLLPLYHARGMLAHVFQ
SPSGCAAFLANYNSNSYANVVFNNEQYSLPHWSISILPDCKNVVFNSVTVGVQTSQMQMCGDDA
SSMTWKRYDEEVYSLAAAPLLTTTSLLEQLNVTRDNSDYLWYITSVDISSSENFLQGGGKPLSL
SVQSAGHALHVFVNGQLQGSAYGTRED*(+)
MPCMSLSMDSFKVLHMVLGKIEESNTMAMLTFEPNVGVHYETWNTGVGGPVVLHRLDEGSRDLT
WQTWSYQWLPSLVEVCTGLPGISFRTDNEPFKMAMQGFTQKIVGMMKSENLFASQGVPIILSQA
SIIFSLGLIENEYGPEGREFRPAGQAYINKAAKMAVGLGTGVPWVMWKEEDAPDPVINACNGFY
CDAFSPNKPYKPTMWTEAWSGYKCALTNVHNILGSRNLLGPSANGRLKILHLLDLYKRVVLLSI
TTCTMEEQILGALLGVPSSQQAMIMMLQLMNMDFLENQSTVILKNSTELLSYASRLWFLLTQQL
LPLYHARGMLAHVFQSPSGCAAFLANYNSNSYANVVFNNEQYSLPHWSISILPDCKNVVFNSVT
VGVQTSQMQMCGDDASSMTWKRYDEEVYSLAAAPLLTTTSLLEQLNVTRDNSDYLWYITSVDIS
SSENFLQGGGKPLSLSVQSAGHALHVFVNGQLQGSAYGTRED*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b