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circRNA ID
AT1G01050_circ_g.3
Alias
ath_circ_000006, 1:31933-32670
Organism
Arabidpsis thaliana
Position
chr1: 31933-32670  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Soluble inorganic pyrophosphatase 1
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
GAGCAGCTACGGATCTTCTTGACAAGGATGAGAGAATCCTCTCGTTAAGACGAGGAGCTGGTCG
CTGCAGCCTCTGGTTATCTTTAGTTTCTTCACTCATctggtcaatcataggcattaatccaatg
gctctggcacgcagaaaacaacccggaagcacaggttcctacacaaagataataatatatattt
gaaataca
Support reads
2
Tissues
root
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTGGTCAATCATAGGCATTAATCCAATGGCTCTGGCACGCAGAAAACAACCCGGAAGCACAGGT
TCCTACACAAAGATAATAATATATATTTGAAATACAAAAAATTGGTGCAAATAGTATAGGGATA
ATATGAGAAAGAAAGAAAGAGTAATACCTGCATGATGACTAAGACATCAATGGGGTCATTGTCT
TCACACAATGTGCGAGGAACAAAACCATAGTTGTGAGGGTACACAACTGATGAGTAGAGAATAC
GATCAACCTGAATGAGAGAATTCAAACTTGTTGAGATTGATTTTGCTATAAGAAAACCATTCAT
ATAAAAAATAAACTTTGTTCTCATCTAACCTTGATGAGTCCTGTCTTTTTGTCAAGCTCGTATT
TGACCTTGCTTCCTTTAGTGATCTCAACAACCTAATAATCATCCAAAGATAAAATGATTAGAGA
ATCTAATAACAACATACTCTGTTTAGAACAAAGAGTAGGAAAAAACTTACCACATTGAAAATCT
GTGGAGCTCCAGGTCCTAGATAGATTATCCAGACTTATGATTTAGTAACAGAATACAAAAGTAT
GAAATCAAAAAGTAGCATGTTTAGAATGATTTATATACCAATCTCAAGATCATGCCATGGATGA
GCAGCTACGGATCTTCTTGACAAGGATGAGAGAATCCTCTCGTTAAGACGAGGAGCTGGTCGCT
GCAGCCTCTGGTTATCTTTAGTTTCTTCACTCAT
Number of exons covered
AT1G01050.1:5
AT1G01050.2:5
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

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Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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