Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024953_circ_g.1 |
ID in PlantcircBase | zma_circ_010258 |
Alias | zma_circ_0000207 |
Organism | Zea mays |
Position | chr10: 96632739-96633199 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024953 |
Parent gene annotation |
Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024953_T024:2 Zm00001d024953_T026:2 Zm00001d024953_T002:2 Zm00001d024953_T016:2 Zm00001d024953_T020:2 Zm00001d024953_T010:2 Zm00001d024953_T013:2 Zm00001d024953_T027:2 Zm00001d024953_T019:2 Zm00001d024953_T018:2 Zm00001d024953_T012:2 Zm00001d024953_T008:2 Zm00001d024953_T005:2 Zm00001d024953_T014:2 Zm00001d024953_T003:2 Zm00001d024953_T004:2 Zm00001d024953_T006:2 Zm00001d024953_T017:2 Zm00001d024953_T025:2 Zm00001d024953_T021:2 Zm00001d024953_T023:2 Zm00001d024953_T015:2 Zm00001d024953_T007:2 Zm00001d024953_T028:2 Zm00001d024953_T011:2 Zm00001d024953_T022:2 Zm00001d024953_T001:2 Zm00001d024953_T009:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.188667769 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96633024-96633114(-) |
Potential amino acid sequence |
MQKDNLVEGQAYSVMGLVPSNYCTEIMYLHARGSSTTWKPLASAQTTDFKLLSKMKYLRRLRRP LLLLALVQGMLHHF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |