Detail information of BGIOSGA033503_circ_igg.1


General Information
CircRNA Name BGIOSGA033503_circ_igg.1
ID in PlantcircBase osi_circ_002991
Alias 10:22124574|22125694
Organism Oryza sativa ssp. indica
Position chr10: 22124574-22125694  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033502_circ_g.1 BGIOSGA033502_circ_ag.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGCTGTGCAAGTCAATGAAGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACG
GTGCTTTCTTCTTCTCCACAAAAAGAGGCTCTCAAGataaagcgctccctccattgacatcaac
atgggtgacaatctgatggataaggtcaatgccttgggtgagcggctcaaggtaagtggggcag
aagttagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAAAGCGCTCCCTCCATTGACATCAACATGGGTGACAATCTGATGGATAAGGTCAATGCCTTG
GGTGAGCGGCTCAAGGTAAGTGGGGCAGAAGTTAGCCGGAAGATGTCAGCTGGTGTCAGTAACA
TGAGTTTCAAGATGAAAGAATTCTTCCAAGGCCAGAACATGGCGGACAAGATAGTCGATGAGGC
CACGCTGGAGACCATGGATGCTCCTGATTGGGCCACCAATCTTGAGATATGTGATATGGTTAAC
ACTGGAAATGTCAACAGCATTGAGCTGATCCGTGCCATCAAGAGACGCATCATGTTGAAGAATC
CACGAGTGCAATATCTTGCTCTTGTCCTCCTTGAGACCGTTGTGAAAAACTGCGAGAAGGCTTT
CTCTGAGATTGCTGCTGAGCGGGTCCTTGATGAGATGGTAAAACTGATCGATGATCCACAGACT
GTAGTCAACAACAGAAACAAGGCACTTATGCTTATTGAAGCATGGGGAGAGTCAGGAGATGAGC
TCCGCTACCTTCCGGTGTATGAAGAGACTTACAAGGTACATAACAAGTAATGATTTCTGCTTAC
ATCAATTTAGTGCACTTTAACCTGAAACAATAATGCTTATGAACGATCTACCAAGAACAAATGA
AACTATTATTCTCCTTACGCATTTGGTGGATTATTCATATAAACCTGCTGCTTTTATATATTCG
ATAAAGAAATCTGATGTATGTCGATCGGACTTCATTCGTTGACCACATACATAGTTGTGTCTGA
AAGGCTGAAGTAATCGTTACATCTGGACACTATTACTGTGGGTTTCTGTTAGCCAGGCTTATTC
AGTTTACATTCAATATTCTTCGCAGAGCTTAAGATCAAGGGGAATTCGCTTTCCTGGGCGTGAT
GATGAGAGTCTGGCACCAATATTTACTCCTCCCCGTTCAGCACCTTCAGCTGAACAATATTCTG
CTGCAGCACAGGAAGGGTATCAAGAAATTCCAGATGAAAGTTTTGCGCCAGTCCACGTTGTTCC
TGCTGTGCAAGTCAATGAAGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACGGTG
CTTTCTTCTTCTCCACAAAAAGAGGCTCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021