Detail information of AT2G04080_circ_g.1


General Information
CircRNA Name AT2G04080_circ_g.1
ID in PlantcircBase ath_circ_012753
Alias 2:1357442-1357886
Organism Arabidpsis thaliana
Position chr2: 1357442-1357886  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04080
Parent gene annotation Protein DETOXIFICATION 2
Parent gene strand -
Alternative splicing 2_circ_ag.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5
Support reads 1/1
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04080.2:1
AT2G04080.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGCCAATACGGAAACCCTAGCAACTTGA
GGATTTCCAGCTCCCAATTTGTTTGACACTCGTGTGctgttccttccagttcatggaggctgtg
acgatagccagtaaagtggcttgcaccgcggatccaaccataacaccgcaccagagtccttttc
cattccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 175
Transcript exons: 1357442-1357530,1357801-1357886
CTGTTCCTTCCAGTTCATGGAGGCTGTGACGATAGCCAGTAAAGTGGCTTGCACCGCGGATCCA
ACCATAACACCGCACCAGAGTCCTTCTACAAGCCAGAGACAAAGCCCTGCCAATACGGAAACCC
TAGCAACTTGAGGATTTCCAGCTCCCAATTTGTTTGACACTCGTGTG

Transcript length: 445
Transcript exons: 1357442-1357886
CTGTTCCTTCCAGTTCATGGAGGCTGTGACGATAGCCAGTAAAGTGGCTTGCACCGCGGATCCA
ACCATAACACCGCACCAGAGTCCTTTTCCATTCCACTCACGACTGAAAGCTAAGTAAACTCCAA
CAGGAGCTCCTACAAGATAATAAGCCACCACGTTGATCAAAGCTCCAATGTGTTGCCACCCACA
TCCCCTAGCCACTCCATTTAGAACTGCCGTTAATCCGTCGAGGATGAAGGAGAGACAGAGCAAA
GGAGATATGTCAGCAACATAGTCAACAACTTCTTTGCTGTTGCTGAATGTGTAGCCTATGATGT
TTCGGCAGGTGAAGAGAAGTGTGCTAAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGC
CAATACGGAAACCCTAGCAACTTGAGGATTTCCAGCTCCCAATTTGTTTGACACTCGTGTG

Genomic sequence CTGTTCCTTCCAGTTCATGGAGGCTGTGACGATAGCCAGTAAAGTGGCTTGCACCGCGGATCCA
ACCATAACACCGCACCAGAGTCCTTTTCCATTCCACTCACGACTGAAAGCTAAGTAAACTCCAA
CAGGAGCTCCTACAAGATAATAAGCCACCACGTTGATCAAAGCTCCAATGTGTTGCCACCCACA
TCCCCTAGCCACTCCATTTAGAACTGCCGTTAATCCGTCGAGGATGAAGGAGAGACAGAGCAAA
GGAGATATGTCAGCAACATAGTCAACAACTTCTTTGCTGTTGCTGAATGTGTAGCCTATGATGT
TTCGGCAGGTGAAGAGAAGTGTGCTAAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGC
CAATACGGAAACCCTAGCAACTTGAGGATTTCCAGCTCCCAATTTGTTTGACACTCGTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.375852929
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020