Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA000738_circ_g.10 |
| ID in PlantcircBase | osi_circ_002434 |
| Alias | 1:35869355|35872981 |
| Organism | Oryza sativa ssp. indica |
| Position | chr1: 35869355-35872981 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA000738 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA000738_circ_g.11 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA000738-TA:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
35872956-35869357(-) 35869385-35871951(-) |
| Potential amino acid sequence |
MLVPDQDVVVEGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVL VFPTGNSVQSLSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGF TSFMHLGDLYDPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQ TLYHIPYFRKHDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESF YDLALDVKGCSDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEY DFVRDTMVKLLQQDQDEEMLVPDQDVVVEGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNH RKLYSDVFVVGGHKWRVLVFPTGNSVQSLSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYS LRKEAAHHFSTRESDWGFTSFMHLGDLYDPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETG YVGLKNQGATCYMNSLLQTLYHIPYFRKHDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHM NYIECINVDYKSTRKESFYDLALDVKGCSDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGM LFIDFPPVLQLQLKRFEYDFVRDTMVKLLQQDQDEEMLVPDQDVVVEGPQPMEDSGSTVENEQV PETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVLVFPTGNSVQSLSMYLDIADANEQPHGWS KYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGFTSFMHLGDLYDPTKGYIVNDKCIIEAEV AVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKHDVQELNRVLCEKLENKM KGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLALDVKGCSDVYASFDKYVEVERLEG DNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDTMVKLLQQDQDEEMLVPDQDVVV EGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVLVFPTGNSVQS LSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGFTSFMHLGDLY DPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRK HDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLALDVKGC SDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDTMVK( -) MILCGIPWLSSCSRTRMRRCWCQTRMLLLRDLSRWKTLDQQLRTSRYQKPLHPDLRGPLKIFRI TESCTLMFLWLGGTNGGC*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |