Detail information of BGIOSGA000738_circ_g.10


General Information
CircRNA Name BGIOSGA000738_circ_g.10
ID in PlantcircBase osi_circ_002434
Alias 1:35869355|35872981
Organism Oryza sativa ssp. indica
Position chr1: 35869355-35872981  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA000738
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA000738_circ_g.11
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA000738-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAACACAGAGAAATCTCACCTTCCATCGGCTGAGGTCCCTCAACAACAACATCCTGGTCTGG
CACCAGCATCTCCTCATCCTGGTCCTGCTGCAGGAGcttaaccatggtatcccgcacaaaatca
tattcaaaccgctttaattgaagttgcaggactggagggaagtcaataaaaagcatccctttct
tggcatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACCATGGTATCCCGCACAAAATCATATTCAAACCGCTTTAATTGAAGTTGCAGGACTGGA
GGGAAGTCAATAAAAAGCATCCCTTTCTTGGCATCCTGAAAAGAGAGGACGAAAATGTTCTGAA
GCACACAATCTAAAAAGTCACTTCATTACCAAGTAATTTGTATGTGTCAAAGCACATTTTCCTT
ATCAAGAATCTAGCATTAAAGTATACTTAAAAAAAATTATAGATCAACCAGAGGTGGAAAATAA
TATTGATGTGCTATGTCACTGGCATGGTCACATTCAAATATGATGACACTTTTTCAATTGATAC
ATCCGTGCACGCTGGGGATAGTGAATAATAATACTACCCAACCACTCAACATAGATTCAACAAT
GTGCAACTCAGTGGGTGAGCCATGAGCATATGATATTTACATAAGTTACCCTTAGGATGGGAAG
ACCAACATCCTAGCTTGTCCTTGTGGATGTGCCAGAATTTAACTAAAAGCCAGGCCTACCCACA
TGGATGGGCTGGGACCAAATCAAACCTTAGATAATATATGAATAGGTTTAACACAGCTCATGTG
AAAGATCAATATGGAATTGTGCATAACAACATAGGAAAAGTGTTGCCTAAAATGAATTCAGCTG
CAAAGAAATATTTAAATCCAAACATTGGTAAATGTGGCATTTGAAGGTTCTAGATCTCAAATGT
CAGTGGGACCAACCTGCAAACCATGTTTCTCAGACTGGTATTTATTATCACCTTCCAATCTCTC
TACTTCAACATACTTATCAAATGATGCATAAACATCTGAACAGCCCTTGACATCAAGTGCAAGA
TCTAGAAAAGAGTTACGAAAATACATGATAAATCTACAATCATGATGAATAGATAAAAACAATA
AAGAAACAAGGTCCAGATTTCACCTTGTCACCTACCATAGAATGATTCTTTCCTTGTAGATTTG
TAGTCAACATTAATGCACTCAATATAATTCATATGATGACCTTCAAATAGCTGTTGAATTGTCC
CTTCCACAGTAGTTCCCTGAATCGAGAGAGTAGTTGTACATTGATGAAACACTATTTATTATCT
TACATATAACAAAAATAAATGTCCAACCTTCATTTTGTTTTCCAGTTTTTCGCAGAGAACACGA
TTCAGTTCTTGAACATCATGCTGCAGGAAAGAATCAACGGTATCCCATCCAAAAGATTTGGTAA
GCTCTTTTGTAGAAACACTATTGTCACTATGCTGAAGTTTGCAGAAAAGACTTTGCAAAGCCAA
AGGGATGCTTCCGCAAGGTGTATCATTCTCTGTAGTTGGCATATGGTATACAGCCTAAAATATC
ATTCTCTGTATCAGCCTCGCATCATAGGATTCATTTAAGAGAATTTACAAATTTAGCCTCACCT
TTCGGAAGTACGGAATATGGTAAAGCGTCTGAAGAAGAGAATTCATGTAGCATGTAGCCCCTTG
ATTCTTAAGGCCAACATAGCCAGTCTCCTTTTTGGAATCATAATTCCAGAAATCAACTATTTTA
CGCACAGCAACCTCAGCCTCAATAATGCATTTATCATTCACAATATAACCTTTAGTCGGATCAT
ATAGATCTCCTAAATGCATAAAAGAAGTGAAGCCCCAATCACTTTCCCGAGTACTGAAATGATG
TGCTGCTTCTGTGGAGGGGAAGGAAACTCATGAATAACGACTGGTGAAATTCATAAAGTATTGT
GCTTAAAACTAAAGCTTTATATGTAAGTTGAATTAAAAAACTATTGCACGCAAGCAGAAAATTT
CTCTCAACTAACATGGAGAAGAAAAAACTGGCAAGCTAGTTTATTTAATATCTTATTTTCTCAA
TTTTTCATGCTGATCTGAGGGGGATTAAAAACAATCCTGTGACATACATTTCAGGAGAATATAT
CTATGTGATTGTATATTGCATAAAAATATATTAACTTTCAGGGCATAACATAAGATAGTAGAGA
GCAGCCGTTTAAACGTATCCTCTCAAAAGGCCATCTGTTTTACTTTAGGAAAACCAAGCTAGAT
TAATCCTATATATAAAGTAGTTAATGCTAATCTTCTCTTCTCTCATGAAGCCACATCATCTCAA
TTGTTTCTAGAGATCAATCATCTACAGTGCAATTCCATCTTCTCTCATGAAGCTTATCACATCA
CCTCAATTGGTTTTAGCATTTGGATCATTGATCTATTATTTCTCTTCTCTTATATACACGATCT
TAATACTTCTAGCATTGGAGGATCTAAGATAAATGTAATTATTTGTAAAGCACATGAAGTCAAT
TTGTTAATTTGGCTACAAAGCAAATTCAGTTTGTACCACACTTTTACTTTTTATATCATACAAA
ATATTGCTAGCAATCTCAAACTAAACAATAACACTTTCAGATAAGCATATCTAATCAGGCAAGA
GATAACAGGAATTACCTTTTCTTAGTGAGTACTTGCTGTCTAACTGGTTGATCACAGCAAGGCT
GAACTGTGCATATTTACTCCATCCATGAGGCTGTTCATTTGCGTCAGCAATATCTAGGTACATC
GAAAGGGACTGTACACTGTTTCCAGTTGGAAAAACTAACACCCGCCTGCAAGGAGGTATAGGAG
CACCAAATTAAGCTACGACTAGTGGTGCATGATAAGAAGCAACAAAAAACCGTTTTTACTCACC
ATTTGTGCCCCCCAACCACAAAAACATCAGAGTACAGCTTTCTGTGATTCGAAAAATCTTCAAT
GGTCCACGTAAATCTGGATGTAGAGGTTTCTGGTACCTGCTCGTTCTCAACTGTTGATCCAGAG
TCTGCAAGATGAAATAAATATGTTAAACAACAAAAGTAACATGATAAACAATTGCATGACTCTA
GTGTCACATGCGCCGGTGAAAATTAGCATATGCCCATTTTTCAATGACCTGATAACGACAGGTA
TACCAGTACCACCACAAAAAACAACCAACACACAACCAGGAAAGAAAAAAAACAAACAGAGCAT
GTTCAGTAGATTGGAATATTACTCTTTTCAAGTTCCAGGTTTCTTAGCCAGCATCTGGAATTCT
GCATTGTTTTTTTTTCCTTAACATCAACCAATAGTACAGGACTACAGGACATGTTTATCACCTT
ATAATCAAAGAGCTAAAACCATCTGGAAACAAACCGCACATTCTTCAATAGTTAACTTACAAAC
CGCACATTCTTCAATAGTTAACTAGACTTATTTTTTGGGAGAACAAGCCCGAGGACTCCTACTG
ACCCTGGCGACCTCCCAGTAGAGTTCAGTAATTCTTACAAAACCTATTGTTTGCAAGTACCCAA
AAAACTAAATACCAGAAGTTTGCAAGTACAGCATGAATGCACGATTCATAATTAATGTTTTGGG
CAGTGGTTCTAGAGACTAGTCGCATCCCATGAAACATACTATGAAAAATGGCCTGAGTTAACAC
CCTAAAAAAATATAACCTAATTAATAACAAAGCTTGACAAACAGATCAGATTAAATTCAGAGGA
AAAATATAAAAACACAGAGAAATCTCACCTTCCATCGGCTGAGGTCCCTCAACAACAACATCCT
GGTCTGGCACCAGCATCTCCTCATCCTGGTCCTGCTGCAGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 35872956-35869357(-)
35869385-35871951(-)
Potential amino acid sequence MLVPDQDVVVEGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVL
VFPTGNSVQSLSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGF
TSFMHLGDLYDPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQ
TLYHIPYFRKHDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESF
YDLALDVKGCSDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEY
DFVRDTMVKLLQQDQDEEMLVPDQDVVVEGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNH
RKLYSDVFVVGGHKWRVLVFPTGNSVQSLSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYS
LRKEAAHHFSTRESDWGFTSFMHLGDLYDPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETG
YVGLKNQGATCYMNSLLQTLYHIPYFRKHDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHM
NYIECINVDYKSTRKESFYDLALDVKGCSDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGM
LFIDFPPVLQLQLKRFEYDFVRDTMVKLLQQDQDEEMLVPDQDVVVEGPQPMEDSGSTVENEQV
PETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVLVFPTGNSVQSLSMYLDIADANEQPHGWS
KYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGFTSFMHLGDLYDPTKGYIVNDKCIIEAEV
AVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKHDVQELNRVLCEKLENKM
KGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLALDVKGCSDVYASFDKYVEVERLEG
DNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDTMVKLLQQDQDEEMLVPDQDVVV
EGPQPMEDSGSTVENEQVPETSTSRFTWTIEDFSNHRKLYSDVFVVGGHKWRVLVFPTGNSVQS
LSMYLDIADANEQPHGWSKYAQFSLAVINQLDSKYSLRKEAAHHFSTRESDWGFTSFMHLGDLY
DPTKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRK
HDVQELNRVLCEKLENKMKGTTVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLALDVKGC
SDVYASFDKYVEVERLEGDNKYQSEKHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDTMVK(
-)
MILCGIPWLSSCSRTRMRRCWCQTRMLLLRDLSRWKTLDQQLRTSRYQKPLHPDLRGPLKIFRI
TESCTLMFLWLGGTNGGC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021