Detail information of GLYMA_03G135200_circ_ig.6


General Information
CircRNA Name GLYMA_03G135200_circ_ig.6
ID in PlantcircBase gma_circ_005656
Alias gma-circRNA0335
Organism Glycine max
Position chr3: 35083769-35088493  JBrowse»
Reference genome v2.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_03G135200_circ_ig.1 GLYMA_03G135200_circ_ig.2 GLYMA_03G135200_circ_ig.3 GLYMA_03G135200_circ_ig.4 GLYMA_03G135200_circ_ig.5 GLYMA_03G135200_circ_ig.7
Support reads NA
Tissues flower bud
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGCAGAATCCACGAATCCTCTGTGTCGTTGTGCCATTACAGGTTGTCTCCATGGTAGCGCA
ATATTCAAATTCCTCCAAGACATACAATGCCAAAATcttatttcggaggttctaggcctcgaat
cctagactctttttgtagtctacaacaacttggtgctttcattgattttcatggcaaaatcaac
ctgcttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATTTCGGAGGTTCTAGGCCTCGAATCCTAGACTCTTTTTGTAGTCTACAACAACTTGGTGC
TTTCATTGATTTTCATGGCAAAATCAACCTGCTTTAACTCTAACATGGAGCGATTAGAGGAGTT
TATGGCCAAACTGGCTTCAAACCACCTCCCTGTCACTGAAAAGCTCGATGACTTGTTGCAACGA
GTAGCTGCACTAGAAACCACTGTCCATCATTCACCTACACCTTCTTCCTCCTCCGCCATACCTA
TACCAAACACACACACTATTAATCCCCATAGATTGAAACTCGATGTTCCCAGATTTGATGGTTC
AGTCCCCTCGGGCTGGGTATTCAAAATCACTCAATTCTTTGAATACCATGCAACCCCAGAATCT
AACAGACTGACCATAGCTTCTTTTTATATGGAGGGGCCGACCTTAGCATGGTTCCAGTGGATTA
TGCGAAATCATGAACTCACCACCTGGCCTAGCTTTCTACAAGCTATTGAAACCCGATTTGCCCA
TTCACCATATAAGGACCCTACTGGTCTTTTGTGCAAACTCACACATACGGGTTTCGTGAAAGAT
TACCTTAATCAATTTGAAGCCCTTGCCAACACGATTGTCGGATTGTTGCCCTCTTTTCTTCTGA
GTTGTTTCGTCTCCGGTCTCGACCCGAATATTTGTCGGGAGGTACAAGCACTTTAACCCTTCAC
TCTTGTGGATGTCGTCGGGCTCGCCCGCCTCCAAGAGGAAAAACTCTTTGAATCCCGCAGGAAC
CCTCGCCTTTGACCACCAATTTTTCCCCACCCTTACCAGCTATTGTTCTTGCACCCACCCCCAC
TCTTCCCCTATTACCCTCACCAGCCAAGCCCCCACCCCTTCCATTAAAACGCCTTATCCCTGAA
GAATTAGCAAGCCGTAGGGAGCGCGACTTATGTTTTTATTACGACGAGAGGTTCACGAGGGGGC
ACCGTTGTGCCTCGCGATTTTTCCTTCTCGTCGCAGATGAGGAACAAGGCAATGACACTCCAAG
CCCTAATATAGCCAACCTTTTCCCCAATTCTGATGACATGGTCGACCTCAAAACCCAACTTAAC
CCGCAACTTACCCAACATCCACTCGAACCGCCCCAAGCCCAAATTAGTTTACATGCTTTAGCAG
GCCAAACCGCCCCAGAAACATTACGCATGGTGGGTCAGATCTTTCACCGGAACGTCGTGATCTT
GGTGGACGGCGGTAGCACGCACAATTTCGTGCAACAACGCCTGGTGAAATCCTTGGGCCTTCAA
GCTGAAACCACTCCTACCTTGTGCATGCTGGTCGGCAATGGTAATGAAGTGGAATGTTGCTTCT
TATGTAGGGACCTCAACGTGCATGTGCAGGGCCACGCCTTCACGGTGGACCTCCATGTACTTCC
TTTGTGCAACATCGATGTCATTTTGGGCGTCCAGTGGCTCAAAGCTCTCAGACCGGTGTTAACC
GATTATAATGATTTGACCATAAAGTTTGTTCTTAACTACAACCTAATTGAACTCAAAGGAAATT
CCGACAAAGCCTTGCTAGCAATTACCCCTCCTCAACTCCGGCGACTAACCCAAACCCATAGTGC
TAGTGAATACTTCCATATTCGCCTTTGTTCCTCAGCTTCACCCTCTCCAACCACTCATCCCGCT
ATCCTTACCTTGACCCACCAATTTTCCTCCCTTTTCCAAACACCAACTGATTTACCACCCTCAC
GCACCACCAACCACTCGATCCATCTCTCACCCTATTCATCTCTGGTTAATGTTCGCCCATACAG
GTACCCTCATTTTCAGAAACAGGAAATTGAATCCCAAGTTTCATGCATGCTCCAACACAGCATC
ATCAGCCCAAGCACCAACCCCCTTTCCTCACCAGTTTTATTAGACAAGAACCAGGATGGATCCT
AGCGATTCTGCATGGACTACAGAGCCCTCAATTCGATCACCATCAAGGATCGCTTCCCGATTCC
GACAATCGACGAACTGCTCGATGAACATGGCGGTGCACGTTGGTTCTCGAAACTGGATTTACTG
AAAGGCTATCACCAAATCCTCATGGCTTCGGCAGATGTGAGCAAAACTGCATTGAGGACTCATC
ATGGTCACTATGAGTTCCTGGTTATGCCCTTTGGCCTTTGTAACACACCTTCTTCATTCCAGGC
CACAATGAACACGACCTTTGTTCCTTATTTGCGTAAATTTATCATCGTCTTTTTTTATGATATT
TTAATTTACAGCAAATCTTTCTCCGAACACCTCACACACTTGAATTTAGCTTTTCAGACACTTC
GCGATTATAGCTTCTTTCTCAAATTATCCAAATGTTCCCTTGCCACTCAACAGGTCGAATGTTT
GGGTCATTTTGTTTCGGAACGCGGGGTGGAACCTGTTCTGCCAAGGTGGAAGTTGTCCTTCAAT
GGCCGATACCACAGTCAGTCAGAGCCTTACATGGGTTTTTAGGCCTTTCGTGCTTTTACCGCCG
CTTCATCCAAGGCTATGCCACCCTGGTTGTGCCACTCACGACCCTGTTGACCAAAGATTCGTTT
CAATGGTTAAACACCGTTGACCAAGCTTTTCTCTGGTTGAAAGAGGCCTGTGTAAGGCTCTGGT
TTTGAGACTATCGAACTTCTCCTTGCCCTTTGTGGTAGGGACTGACGCCTCTGGAATCGGTATG
GGAGCGATTTTATCCCAACAACATCACCCTATAGCCTATTTCAGCAAGCCTTTTTGTCCAAAGC
TACTCCACGCATCCACCTATGTTCGAGAACTAGCGACGATCATGGCGGCAATCAAAAAGTGGCG
TCAGTACCTACTGGGCCACCAATTCACAATCCTCACAGACCACAAAAGTCTTAAGGAACTCATG
GCACAAGCAATCCAAACTCCGGAGCAACAGACATACCTCGCGCGCTTAATGGGTTATGATTATA
CGATTCAATATTGCGCCAGCAAGACAAATTTGGTAGCGGATGCCTTCTCCCGACGACCGGAGAT
CACTTCCGGGAGTTTTTTGATACTAACAATCCCAAATTGCATGTTTTTGCAAAACTTGAAGGCA
GAGCTATCAACCAATCTAGTGTTTCGGAGGTACCACCAGAAGATCTTTGACGAACCCTACAATC
ACTCCAACTGTCTTTTCTGGCAAGATTTAATTTTGCAGAAGGGGCACATCTGGCTACTACAGGG
AGCTCCGTCCATCTCGACTATCCTTGTCGAATTTCACTCAACACCCACCGCAGGACACATGGGG
GTCATGAAGACATTAACACGGGTTCGCGAGAACTTTACCTGGGCAAATATGAAAAACGGCGTTC
GCCAATATGTTGCCAACTGCATTTCATGTCAACAATCAAAGTATGATCACCGACACTCTCCAGG
ATTATTATGTCCTTTGCCTATTCCGACGCGGCCGTGGGAAGACCTTTCCCTAGACTTTATTGTG
GGACTACCAAACTTTCAGGGTCATTCGACCATTCTGGTCGTTGTAGACCACTTCTCGAAAGGAG
TTCATTTGGGCATGTTACCGACACAGTACTCAGCTTCCGGCGTGGCAAGGATGTTCATGGACAT
CGTCGGCAAAATCCACAGCATGCCTCGAAGTTTGGTTTTAGATAGGGATCCCCCTCTTTGTGAG
TCATTTTTGGTACAAGCTAAGCGGCACGAAGCTCCGCATGGGCTCAGCATACCACCCTCAGACC
GACGGACAGACAGAGGTCATGAACCGTGTCATCGAGCAGTACCTCAGAGCCTTTGTCCATTAGA
GACCATCCACATGGGAGCGATTCTTGATATGGGCGGAGTGGTAGTATAACACCTCTGTGCACTC
TGCAACTGGAATGTCCCTATATGAGATAACCTTCGGCAAGAAACCTCCAAGCTTACTTCAATAC
CTGGAGGAAACTTCAAATGTGGAAGCAGTTGATGAATGACTTAAGCAACGGGATCAAGTTCTTA
CTAGTCTAGCAAGGAAGTTGGCAAAGGCACAACAATGAATGAAATAGTTTGCCGATAAACAACA
TCGTGATATGAATTTCGAAGTAGGAGGCTGGGTGTTGGTCAAATTACGACCCCGCCGGCAGACG
ACCGTCACCGGAAGCAAATATTCTAAACTCGCGAAAAGATTCTATGATCCCTTTCAAGTTATCC
AATGAATCGGGGTAGTTGCGTACAAGCTGGAATTGCCGCCAACTTCAAAGATTCATCCAGTGTT
CCATTGTTGCTTATTAAAACCATTCCAATTTCAATCCACCACAACAGACCCTAGCCTGGAGTTG
CCAGCTTTATTAGAGGATAATCAACCCCTCACAATCCTCGACACAAAATGGGAACAGACAGCTT
CGGGAAGACAATTACTTGTCCTAGTTCAATGGACAGGATTACTTCCAGAAGACACTTCATGGGA
GAAGTGGGAGAACCTTAAAAAGGATTACAACCTTGAGGACAAGGTTGTTTTGGAAGCTCGGAGG
GATGTTATGAATGAAGACACAGAGCAAGATGCAACAACAGAGCATGAGGCAGAAGCAAGAGAAG
AAGGTCAAAAAGGGAAATTAGTAAGCCCCAGTACCTTAAGGATTATGCAACAAAATGAGGCTAA
GCTGGCAATGATCTTCTAGAAGCAGAATCCACGAATCCTCTGTGTCGTTGTGCCATTACAGGTT
GTCTCCATGGTAGCGCAATATTCAAATTCCTCCAAGACATACAATGCCAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.02851651
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs gma-miR395h
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description cytoplasmic male sterility
Other Information
References Chen et al., 2018