Detail information of BGIOSGA031425_circ_g.6


General Information
CircRNA Name BGIOSGA031425_circ_g.6
ID in PlantcircBase osi_circ_002941
Alias 10:20906251|20906810
Organism Oryza sativa ssp. indica
Position chr10: 20906251-20906810  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031425
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031425_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031425-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAAGTTCCTTAGTTGTTCGGCTCGCTATTGTAACACTTCTTTGAATGACAGGACCTATAATC
TCTTTGATGGCCTTATCCAAAGCCATATCCATGATTcttgcgtgttgcaacggtctctattagg
gcacatccaagatccagattatcattgacaagaataagcataatctgctctgtggattcagtat
tattagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCGTGTTGCAACGGTCTCTATTAGGGCACATCCAAGATCCAGATTATCATTGACAAGAATA
AGCATAATCTGCTCTGTGGATTCAGTATTATTAGTTATGCCCTGAATAAGACTACGAAGATGAG
ATGATAAAGCAACACGAAGAGGTTCCTACAAAAAAGAAAGAACAATTGAATAAGCTACCATACA
TGTGATGCAAACATGGATAGAACTAAACAGTAGTCCTAGTATATTCCTGCCAGCAAACTAAATC
TTAAAAACCTTAAGCAGAATTACCTTGGATGTAACATGGGCAAGACTTCCAGCTAGTGTACCGA
CCATCAAATGTGCAGAACGAGATACGGCACTATCATCCGCTTCCATTGCATAATCCTGCAGGAA
AACAAATAAGCAAGCATATAAGAAACTTTTTCTACCACAGCAATAGCTATCACAGATGCATGGT
GGTCACCTTTAGAATAAGTTCCTTAGTTGTTCGGCTCGCTATTGTAACACTTCTTTGAATGACA
GGACCTATAATCTCTTTGATGGCCTTATCCAAAGCCATATCCATGATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 20906286-20906769(-)
20906808-20906789(-)
20906758-20906274(+)
Potential amino acid sequence MCPNRDRCNTQESWIWLWIRPSKRL*(-)
MDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLAGSLAHVT
SKEPLRVALSSHLRSLIQGITNNTESTEQIMLILVNDNLDLGCALIETVATRKNHGYGFG*(-)
MTGPIISLMALSKAISMILACCNGLY*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021