Detail information of Zm00001d028210_circ_g.1


General Information
CircRNA Name Zm00001d028210_circ_g.1
ID in PlantcircBase zma_circ_000565
Alias circ120
Organism Zea mays
Position chr1: 26519552-26520071  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d028210
Parent gene annotation Replication protein A 70 kDa DNA-binding subunit B
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d028210_T002:3
Zm00001d028210_T001:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGCTGCAATTTTTCTTGCAGGCGTGTCTCTTTCTACTGTAGGCAAAAGTACTCTTGCGATTAA
TCCTGATCTACACGAGGCTCAGAATCTCAAATCATGgatattgttggtgtggttcagagcgtat
ctcccacactcagtgttaggagaaagattgacaacgagacaataccgaagcgtgacattgttgt
ggcggatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATTGTTGGTGTGGTTCAGAGCGTATCTCCCACACTCAGTGTTAGGAGAAAGATTGACAACG
AGACAATACCGAAGCGTGACATTGTTGTGGCGGATGACTCGTAAGTAGCACTTGATCTTTTTTT
ACCTTGTTGATAGGTCGGAATACAAATTCTCTAATCACAAATATAAGTCTATCTGAGAAAGTCA
AGTAGTCCTAATCGACTCATTTCATTTCTTGCAGTGGCAAAACTGTTAGCATCTCTCTTTGGAA
TGATCTTGCTACTACGACCGGCCAAGAGCTTTTGAACATGGCTGACAGTTCGCCTGTTGTTGCG
ATAAAGAGCCTAAAAGTGTCTGACTTCCAAGGTATGCAATCAAATCTCTGTTCAATCTTCACTG
GAAACCAGTTGCTTACTGAGTGTCGTGATAACTGTGGCGCTGCAATTTTTCTTGCAGGCGTGTC
TCTTTCTACTGTAGGCAAAAGTACTCTTGCGATTAATCCTGATCTACACGAGGCTCAGAATCTC
AAATCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.203410529
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b