Detail information of Os12g0211000_circ_igg.1


General Information
CircRNA Name Os12g0211000_circ_igg.1
ID in PlantcircBase osa_circ_010844
Alias Os_ciR2115
Organism Oryza sativa
Position chr12: 5818096-5822917  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 7/2
Tissues root/seed
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTTGTGATCCCGGGCAGCAAGCATCGCGACGGGTCCATCTACAGGACGGATGCGCACTACT
GGCACGGCCTCTACCACCTCGACGATACCAGCGAAActcgcctggaaccgatgacgccatcgta
ttcagagcaggactgcaagccatgcgtcgccgattgccagtggcacattggtggctccatgatg
cagatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGCCTGGAACCGATGACGCCATCGTATTCAGAGCAGGACTGCAAGCCATGCGTCGCCGATTG
CCAGTGGCACATTGGTGGCTCCATGATGCAGATCTTCTCCCTTAAGCTAGCTGAAATCTCTAAT
TTCGCCACCAGAGCTCCTGGTGCCGGTGCTATTCAGCTGTATGGGTTCATGGCTGTCCGGAATC
TCTTGGACCCATTGCGAAACTACGTCTTCAACCGCACCAGGGACAATCCGTTCACCATCGGCGA
CGTCTCCTATCCGTTCATACAGATGACTGGCCCTAAGAGGGGCATCGCGATGAACGCTCGCGTG
ATGATCGAGTACGACATGAGGATCAAGATGGGGGAGAGTGAGCAAGATGATCTGTTGCTTGTCG
ACGGGGCTGCCACCTTCAGCGAGATAACGAATTTCATACCATACATTTATCGCATCAATGGTGA
TTGCGGCATGGCGGTGGACATAAGGCTAGCACACTTCTCCCGTGCAATTGAGGCCACGGCGCAA
GTTTGGGTATATAAACTAAAGGATGGCTGTGGCAGCCTAAACTTGACTATAACTTGTCACGTTA
GTTATATGCCCCCACAAATTAAGCTCTTTCAAGGTCCAATTGATAAGCTAGGTGACCAAAATAG
GTTTGTAGTTGCTGCAAAGCTGAATACTCTGATGATTACAGAGTTCAAGCTTGTTCATCAGCAC
GACTCAATCAGTCAGAGATTTGAGTCCATGGTTATGCCACATGGAAGTAAGTTCCACTATGCCA
AGTTAGCGGATTTAGCAACTATAGGCGTGGAGATCTTTTGGTCAATTTTACCCATTTAGCTACA
AGAAAGCTTTCGAGCCTTCTACTTTGTTACATTCTATTTATTTTCTGGCAAACAATCACCTACC
TGTAAATAGCTAGAGCAATGCAAGTTTCTTTTTTAGGATTTGTGCCATGTATGTATCATTTCCA
TATGAACCAACCAAGGCTTCATGTGTCTGTGTCAATTGTCAGGGCAAATCTTGTAGACCCAACC
ATAGCAGGGTATTTAATTGATGACCATACACCTTCAGACAAACTGCAAAAGTGAGCTTCTTAAT
CATTGAGTAGGTAATCTTTTGATGTATCTTTGTGTGTGTTCTTTTTCTGTGATGTGGGTGTGGG
ATTCTTGTCTTGGGGTGTGTAGGTGGGAGGGGGGTTGTTGAATGACACTTGTGTAAATATTGCT
TTGCTTTCAATTGATATTCTGGCTGTTGAATTTACATGGAGATTGGTGATTGATATCAACCGGC
ACTTTTTATTTGTCACCTTGTTTGTACAAGGGAGTGAGAGAGGGGGTTAGTGTGGGGGACTGTG
GAGGAGATGATGAGGAGGTTGACCAGGTTGAGATGCTTTTCTTATGTTTCAGCTGGGAGAATAG
CTTTTGCAGTGACTACAAACTCCTTAGAGTGCACCAGTAAGTTGACTATCTTACTTTTCTCTTT
TGTTCTTTTCTTTGCTTTGGATGTCTTGTTTCAACTTCACTCAATCAGCTTGTTAGAATATTTA
TGCAAATTTATATAATCAACATTGTTATTAGATGAATAGTATTTTCTATCTTTGTGCTCAAATA
TTGGTTGGATCATGTTCTATTGACACATAGACCTAAAACAAATATTTGACAAGATTGACTAATA
TTAACCTGGTGGCTGAAATGTGCAACATATGTAGCATGTCAAACAAGTGCTGTTTTTACTAATT
ACGCTCAAGCCAGTACAACAAAAATTCAGGTTGAACAGTTTTCTATGACAAAAATACACTACCA
GATGACTAGGTGCCCTCTTGGTAAGAACCACAAATTCTACTTTGAATATTCAGTCAAGAAGCAT
GTGAAATATTCCATGTTGGTTGGTGCCAATTTGACTTGGCTGTTCATTTAGCATAATAAATTCT
GGCAGAACTACAGTGGTATAAGCAGCAGTTACTTTTTTCTTTGCTCCAAAGCAGAAGAATTAGA
GTAGAATAGTTGCAGGAGGTGAATGAGATGTGGGCAGGGCTTGGGTACTACCGGAGGGCTTGAT
TTCTGCTGGTGATGATTAGTAAATAGATTGATCATGAATTCATGGCTGATCCTGTGCGAGATGA
CGTGGATCTGCAAGGGGAATGTTTGTTGCATTCTTTGTAAGAATTTTTCAACTTTTGCAGTTCC
TGTGCACTGTTCGATGTTTTGTCTCAAAGGGAGAGTTATATTTAGAATCTGTTTTGTGTTACAG
ATGAGGGAATTATGACTATTGGTTGCACAAATTGGTGAGGTCTGTGGCATTGGAGATTACACAG
AGGGAGCCATTGCCTCGATAGCCTTCAATGAGGTTGGGCTCTACATAATTTATATCCTATTCAG
ATCACTATGGGTATCCTTTACATATACTCACATGATTGTGCAACTTTCTTGCTAATGTGGGATG
TCCCTGTTGTGGATGGAAATACTATTCGAGTTATCAGTGGGCTCTAGGATTCCTGGTAAGCAAC
TGTCTTTGTTGATCACTGATAAAGCCTTGTAAACATATCTATGACATTCCACGACTTTTTATAT
TTATGACAAAATAGCTCTGGTGAATATCACACTTCATTGGGCTGTACTCACAAGGTTCTGTATG
GTACTGATCCTGTGTATCATTTTCTTCCTGCTGAGCTGGTTACTGGAGGTGTTGGTGATTATGA
GGCATCCACTTTGTTGCAAGATCATCAATTGTTTTGTGACATGCTTCAGCAGCAGTTGTCTAAG
GCCCAAGTAGAATGAAGTAGTATGTTGATGAGAAATGCTCCTTGGTGTTTTGAGTGGGAGATCA
AGTGTATTCGAAGCTTCAATCCTATGATCAGAAATCAGTTGCTTCTCGGCTTAACCCAAGTTAG
CTGTTAAGTAGTTTGATCCTTCCCCATCTTGGTTCGCATTGGGGAAGTGGCATACAAACTGCAG
GTTTCCTAAAGATTCATTGATTCACCATGTTTTTCATGTCTCGCAGCTCAAGCAGTTTGTGCTA
GATCATGTGTTTTTTTTTTGCTGGGACAGCTTGTCCATGAAGTGTGGCCCGTTTTTTTTTTGTC
CATGGATGTCAATGCCATGTGGGCCACATGCCACGTAGGCACCACGTTAACCAAAACTAGCCTC
CCTAGTGTATTAGGATCTCTTTTGCACTGTTTTTGCAAGTTGGAGGTTAAGATTTGTTGTATTG
CGGTTGAGGGATGCAAATTAAATTTGACGGAATGATAAGGGACATAAAGTGAACTTATTACTCC
CTCTTGCCTCCACTCTCGCCACTGCCTCCTCTCCTCTCTCCCTGCCGCCGCAGGGGTATAGCAG
GCCAAACGGGCGGCCCGGCCCAGCACGGCACGGCACGCCGACGGCACGGCCCACTAGGGCACGG
CCCGTTAGGCACGACTCCTGTAGCGGGCCGTGCCGTGCCGGCCCACGTGCCAAGGCCACGGCCC
AAGCACGGCCCAAGAAGGTGCTGGGCCGTGCCGGGCCGGCACGGCTACTGTAGTGGCACGTGGG
CTTGTAGCCGGCCCACTAGTACATGTGGCCCATAAAAATTGAAATTTGAGGGGAAAAAAAGAAA
AAAGGCAGAAAAAACATAATATAAAGGAAAAAATGATAAATATAGGATAAATGTGAGGAAAATT
TAGGAAATATATCATAAAATATATGGTACAAATAGGATAAAATGTGGAAAAAAAATAAAAAATA
TGAGAAATATATGGGAAAAATTAGAAAATCGTAGGAAAAATAAATGGGCCGGTGGGCCGTGCCA
TGCCGGCACGCTACAGTAAACGTGCCGTGCCGTGCCAGCCCACGGGCTGAGGCATCGGCCCAAA
CACGGCACGGGATAACGGGCCGTGCCGGCACGGCCCACAGGCTGGCGTGCCGTGCCGGGTCTGG
GCCGGCTACAGTACTGCCGTGCTCGGGCCGGCCCGGCTTGGCACGGCCCATTTGGCCAGGTCTA
CGCAGGGGTCAGTGGCGGCTGGGCTGATGTGGCGTCGGCGGTGGTGATGGGTGGGTGGAGGAGG
AGGTGAGATGAGGGCGTTGGGCATGGGCGGTGGGTGCTGCCTCCTCCCTCGGTGAGTTTTCACC
AGCCACACCTTCTCTACAAGACACTAACATGTGGGGCCCGTGTGCTGGCTCAGCTAGTCAACGG
GGTGAACCGGTGAAAGATGCCCATCGGACGAAACTATCTCCCAAACTGTTTGAGGAGTGATTTG
CGACGGCTTTGTGAGTTGGAGATAAGTAATACCTGATTTTGCGGTTGTGGCATGAGCGGAGGGA
CGTAAAGTAGACTTATTCCTCTTCTAATAAAGTGCTGGCCCATCAGGCCTTTCTAACAGCCCAA
GCCCACACAGCCAGACTACACACCAACCGAAGTCTGAACTTGAAACTGGCCGATTCCGATCAAA
TGTCGATTCAGCACGAAAATTAATAAAAAGGAAAAGAAACAAAGAAGAGGCGACTCGATGCAGT
TAAACCTATTCGATTCGAATCCGATGGAAGGCGGCGGCAGCGATTGCCGGCGGCCAGCCTCCGA
CGATCACGAGGGGACGGCGGTTGCCAGTCTCCCTAGCTCCAGGAAGAGGAAGGCGGCTAAGGAT
TTAGAGGAGGAGGAGGAGGATTTGCAGCCGGAGGAGGAGGCGCGTCCGCCGGCGCCGCCGGCGA
AGGGTCGGTCGTGTCTGCCGGCGGCGTGCCATGAGGACGGCATCATCCCGGCATTTGTGATCCC
GGGCAGCAAGCATCGCGACGGGTCCATCTACAGGACGGATGCGCACTACTGGCACGGCCTCTAC
CACCTCGACGATACCAGCGAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.346865511
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017