Detail information of Os01g0120300_circ_g.2


General Information
CircRNA Name Os01g0120300_circ_g.2
ID in PlantcircBase osa_circ_000153
Alias Os01circ01175
Organism Oryza sativa
Position chr1: 1147485-1148199  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os01g0120300
Parent gene annotation Similar to EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoa
cyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding. (Os01t
0120300-00)
Parent gene strand -
Alternative splicing Os01g0120300_circ_g.1 Os01g0120300_circ_g.3 Os01g0120300_circ_g.4 Os01g0120300_circ_g.5
Support reads 2/1
Tissues leaf/shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0120300-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTAGAAATCTATGCACA
CCTTCAATTCCACCAGTGCTCCATGTTTTTGAATCTcttgtatgcagcattcacaaattccatc
attgcagaaattgcagtgttaaatcttgtttcttgaatttcctctgtgacctataaaacataac
aatacatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 256
Transcript exons: 1147485-1147562,1148022-1148199
CTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTTCTTGA
ATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCT
CATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCT
CCATGTCCTTCCTAGAAATCTATGCACACCTTCAATTCCACCAGTGCTCCATGTTTTTGAATCT

Genomic sequence CTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTTCTTGA
ATTTCCTCTGTGACCTATAAAACATAACAATACATTATAGTCATCAATCACCAATCACATCAGC
ACAACTACAGGAAAAAAATTATCAGTGCATAATCATGTTTAGCAGTAAGGAGACCCTGAGAATT
GTGTGATGATACAATCTTGAAATAGTCAGTACATAGGCAAAGCTTTTCACAGGGTAACTGATAG
GGGAACAGTTGCAAAGTACCATTACAACTAATCCATCTCAATATTGGAAGCATAAAAGGTACAA
AAATAATTGAAATGGTGGCACAGGCTGTAAAATTAATTAATAGAATTTATATTCCCCAAAGGGC
ATGTCATGTATAGGAATTATGTGCCGGGAACTTGGTAAAACTGTACAAATTTCCAAACCAAACT
GCTAGTAAACCTAAAATTTTGAATGGCTTTCATTTCAGAGTGAATTAGTGAAAAGATGTTATGT
GATCATGCTGTCAACTGTGACGTACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAA
GGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCA
ACTACGAGTCTCCATGTCCTTCCTAGAAATCTATGCACACCTTCAATTCCACCAGTGCTCCATG
TTTTTGAATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.161539219
Functional Information
Coding potential Y
Potential coding position 1148100-1147545(+)
1147516-1148169(-)
1147500-1148169(-)
Potential amino acid sequence MIHLVMVYQLRVSMSFLEIYAHLQFHQCSMFLNLLYAAFTNSIIAEIAVLNLVS*(+)
MMEFVNAAYKRFKNMEHWWN*(-)
MLHTRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTTVTDEEPTLDQLRVLHKCIAR
VTEEIQETRFNTAISAMMEFVNAAYKRFKNMEHWWN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017