Detail information of Os11g0550900_circ_ag.1


General Information
CircRNA Name Os11g0550900_circ_ag.1
ID in PlantcircBase osa_circ_009605
Alias Os_ciR202
Organism Oryza sativa
Position chr11: 20487668-20502531  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0550500_circ_igg.1 Os11g0551350_circ_g.1
Support reads 170/8
Tissues root/shoot, anther, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGATCTCATCCATCTGCCTGCGAAACAACATGAGGCGCCCGACCGCCCTCCCGGTCATCCTCC
CCGCCACCCTCGCGATCTTGATCATGTCGCTGCGCTtcatcatgagggagcaagccccgaggat
gaccaccaactggccggtggagaaccccagcattctgccttcccctcgaatcaccggccgccgc
cgccaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_003186*
PMCS 0.76094961
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017