Detail information of Os04g0663100_circ_g.2


General Information
CircRNA Name Os04g0663100_circ_g.2
ID in PlantcircBase osa_circ_025821
Alias NA
Organism Oryza sativa
Position chr4: 33841746-33844908  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0663100
Parent gene annotation Similar to OSIGBa0099L20.2 protein. (Os04t0663100-01)
Parent gene strand +
Alternative splicing Os04g0663100_circ_g.1 Os04g0663100_circ_g.3 Os04g0663100_circ_g.4 Os04g0663100_circ_g.5 Os04g0663100_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0663100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTAAGCAAGATTCATCTCCTCGCATGCAACGATCATCATCCCAAGCTCAGCAGAATGTGAAAA
GCAATGGTGCTGTTCCTGTTCCTCCCAATTCATCTGaacaaggccatatcagataaaagtaggt
ggagctttcgtaggaggtctacaaggcatcgtgttttgaagaattctgatatatctgaacctga
aactctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACAAGGCCATATCAGATAAAAGTAGGTGGAGCTTTCGTAGGAGGTCTACAAGGCATCGTGTTT
TGAAGAATTCTGATATATCTGAACCTGAAACTCTTAGTTCGAGCAAAGCAAAAGCTGAAATTGC
TCCAAGCAACATCTATTCTTCAACTTACTCCTATGCCTCAGAAAAACCTCTACAGCAAGAGAAA
CCAGATGAGAAAATTCTGCAGCAAGAGAAATCAGATGAGAAAATTCTGCAGCAAGACGAACCAG
CTGAGAAAATTCTGCAGCAAGAGAAACCGGACGAGAAAATTTTGCAGCAAGATAAACCAGATGA
GGGGCCTTTGAATGAAGAGATGCCTGATGAAAAACTGATAGAGAAGCCAATTGATCAGCCAGGT
GATGAATCAATTGAAAAGCCAGCTGATGAACCAATTGAAAAGTCAGCTGACCAGATAACTGAAA
GGTCAATTGAGCAGCCAGCTGAAAGAGTAACTGAAGTGCCAATCCAAGAACCAACTGAAAGGGT
AACTGAAACTCCAATAGTAAAGCCAAATGATAATGATGTTGAGGAACACACTGATAAGACGGAT
GAAAGTATTTTTGTTTCATCAACTGAGGTGAAGCAGGAGGAAACCGTCTCTCTCTTTGATGGAA
GCAGTGAAGACCATCAGGAAGATTGTGCGGAGACTGCTGCTGCTGTCATTCAGTCTGGCATCAG
AGTGCACACTGTATGTTGCAGTATTTCCCACTATTTATATTTATTAATTATTTTTCTGTTAGTG
TTATTACATTATTGTCATTTACATGACTATAGGAAGAGCAAGAACTACCAAATGATAAGGACCT
TGTGAAACTGCAAGCTGTGATACGTGGGCATCTTGTTAGGAGGCAGGCTGCAGAATCATTACAA
TGCTTGCTTGCTATTGTTAAAATGCAAGGACTTGTCCGGGTTCATCAAGCACAGCAATATGGAG
GAAAGTTTCAGGTATTCAAGGCACTCTCATTTAGACACGTATGGTATCATTGTATCTAGACAGT
ATAAACTCTTTTGCTGCCAGTCAGTTAAGCTTGGTTTAATATTATTCAATATAAGTTTAATATG
CTATGTGAAGTCTATGATCTTCTTATCCTTCCTTCGCCAAGTTCCTTCTTCTAGTAACCTGAAA
GCTGTCAACCTCTTGTTGGCAATTGATCTTAAGGTTTAGTATGTGCGGAGGCAATCCACTTTAG
TTGCTACATTGATTGGATATCTCGCATCTCGATGTTGAATTCCATGCACGCACAATCATTAATT
TTGGATCAAAACCTTATCTGCTGCACTTAACACGTATATAATTCTTGTTTCTGTGTGACAATAC
TGAATAGTAGCCTTGCTTGAACATTTTGCTTGTTTGTTCATGATTTTACATTTCTTTTTGCAGG
ACTCTTTGATCTGTTCTTCAAGTGAGAAATTACTCAATAATGGATTTGCTCTGAAGGTTAGATG
AAAGAACCCTTATTAACTAAGATTATCATACGTTAGTTCTTGGTTGGATTTTCTCATGTTTGTT
ACCTTCTGTCAGCTCATGGACAGCATGTCGACTTCAAAATCCATTCACATAAAATGTGATCCTT
CTGAACCTGATGTTGCATGGAAATGGATGGAGAGATGGACATCCATGATTCCACCAAACACTGG
GGGACACTTGCTAGAGGATAGAGAGAATAACGAGTCGGTGGATGAGAAAATAAAAGGAGATGCT
CAACATGAGGAAAATACCCTTCCTTTGGATTCTGACATCTCTTTCCTGAAGTTGGTGCCTGATG
ATGCGGAAGAGACACTAAGGCCATCTGATTCTCATCCCCTGGAGGTTTCTGCATGCATTCCAGA
TAGAACTTCTGGAATGGAAATTGAAGATGTTCCTGAACCAGATTTGATTGAAAAGTTCAAGGAA
GATGTTGAAAAATTGACTGAACCGGAGACTGAGAATGTTGCGGAACAACCTTTGGAGGTCTCAG
TTGAACAATCTACTCAAACTGATACATCAAGGGAACCCATTCCTCTTCCTGAAAAACCTGAATC
TTCCTTTGATGATACTATGGATGCATATAAAACTGAGCAGACTTCGGAGATGGAAGGTAAAAAG
TTTATGGCTAGAAAGTCATGCAATCCTGCATTTGCTGCTGCACAGTTAAAATTTGAAGAGTTGA
CTTCCAATTTGACGGTCAGTAGGTCCAACAGTCTGGATGGGGCAAACAAACCAAAGGTACATAC
TCCTCGTTCACAAGACAATGTCTCACCCAAGCAAAGTAATGACACAAGCATACCAGAGAGCTCA
GTGGGGCATGATCCTAAAATCGTAGTTGCTGCTTCAGAATGTGGAACTGAGATATCAATCTCCT
CTACACTTGACTCACCGGATAGATCAGAAGCTGATGGTGGCGAGATTGTACTGGAGATTGGATC
CCTGGAAGATAGGAACCATGTTGGTGATAATGCTGAAAAGGATAACAGTGTTTTGCATTCTGAA
GTGAACACTTCTGGAGGAGCTATCGAGCCAGAAAAGGAAGTACAAACTGATGACACTGCTATCG
CTGCCAATGCAATTGATCCTGTGCCTGTTGAACAACCACATCTGGGACAGGAAAAGCCTGATTT
ACATGATGAACTGGAAAAATCTGTAGGATCTTATGTGAAGACACCTGAAGGTACTCCCTTGAGC
CGAACTACCTTTGCTGAATCTCATGGGACACCATCAAGTGAGGTCTCTGTTAACACCAAAAAAA
GCAAGAGCAAAAGGCCCAAGTCTCATGTAAGCAAGAGATCACTAACTAGTCCAAGCAGCGATTC
TGTGGGACGGAGCAGCATGGATAATCTGTCAAAGGATTACAGACTTGGGAGGCGAGAGAGCTCA
GGCAAGGTTAAATCTGATCATGTTGATCAAGAACCTCGCATAAGCAACAGCACTCCATTGCCAA
GTTATATGCAGTTTACAGAATCTGCAAGGGCAAAGGCATCTGCTAGTGTATCACCAAAGTTAAG
CCCGGATGTGCAAGACAACAATCCAAGGAAAAGGCACTCTTTGCCCATGACTAACGGTAAGCAA
GATTCATCTCCTCGCATGCAACGATCATCATCCCAAGCTCAGCAGAATGTGAAAAGCAATGGTG
CTGTTCCTGTTCCTCCCAATTCATCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.137663155
Functional Information
Coding potential Y
Potential coding position 33842086-33841762(+)
33844877-33841762(+)
33841887-33844904(-)
Potential amino acid sequence MPDEKLIEKPIDQPGDESIEKPADEPIEKSADQITERSIEQPAERVTEVPIQEPTERVTETPIV
KPNDNDVEEHTDKTDESIFVSSTEVKQEETVSLFDGSSEDHQEDCAETAAAVIQSGIRVHTEEQ
ELPNDKDLVKLQAVIRGHLVRRQAAESLQCLLAIVKMQGLVRVHQAQQYGGKFQDSLICSSSEK
LLNNGFALKLMDSMSTSKSIHIKCDPSEPDVAWKWMERWTSMIPPNTGGHLLEDRENNESVDEK
IKGDAQHEENTLPLDSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGMEIEDVPEPDLI
EKFKEDVEKLTEPETENVAEQPLEVSVEQSTQTDTSREPIPLPEKPESSFDDTMDAYKTEQTSE
MEGKKFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKVHTPRSQDNVSPKQSNDTS
IPESSVGHDPKIVVAASECGTEISISSTLDSPDRSEADGGEIVLEIGSLEDRNHVGDNAEKDNS
VLHSEVNTSGGAIEPEKEVQTDDTAIAANAIDPVPVEQPHLGQEKPDLHDELEKSVGSYVKTPE
GTPLSRTTFAESHGTPSSEVSVNTKKSKSKRPKSHVSKRSLTSPSSDSVGRSSMDNLSKDYRLG
RRESSGKVKSDHVDQEPRISNSTPLPSYMQFTESARAKASASVSPKLSPDVQDNNPRKRHSLPM
TNGKQDSSPRMQRSSSQAQQNVKSNGAVPVPPNSSEQGHIR*(+)
MVLFLFLPIHLNKAISDKSRWSFRRRSTRHRVLKNSDISEPETLSSSKAKAEIAPSNIYSSTYS
YASEKPLQQEKPDEKILQQEKSDEKILQQDEPAEKILQQEKPDEKILQQDKPDEGPLNEEMPDE
KLIEKPIDQPGDESIEKPADEPIEKSADQITERSIEQPAERVTEVPIQEPTERVTETPIVKPND
NDVEEHTDKTDESIFVSSTEVKQEETVSLFDGSSEDHQEDCAETAAAVIQSGIRVHTEEQELPN
DKDLVKLQAVIRGHLVRRQAAESLQCLLAIVKMQGLVRVHQAQQYGGKFQDSLICSSSEKLLNN
GFALKLMDSMSTSKSIHIKCDPSEPDVAWKWMERWTSMIPPNTGGHLLEDRENNESVDEKIKGD
AQHEENTLPLDSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGMEIEDVPEPDLIEKFK
EDVEKLTEPETENVAEQPLEVSVEQSTQTDTSREPIPLPEKPESSFDDTMDAYKTEQTSEMEGK
KFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKVHTPRSQDNVSPKQSNDTSIPES
SVGHDPKIVVAASECGTEISISSTLDSPDRSEADGGEIVLEIGSLEDRNHVGDNAEKDNSVLHS
EVNTSGGAIEPEKEVQTDDTAIAANAIDPVPVEQPHLGQEKPDLHDELEKSVGSYVKTPEGTPL
SRTTFAESHGTPSSEVSVNTKKSKSKRPKSHVSKRSLTSPSSDSVGRSSMDNLSKDYRLGRRES
SGKVKSDHVDQEPRISNSTPLPSYMQFTESARAKASASVSPKLSPDVQDNNPRKRHSLPMTNGK
QDSSPRMQRSSSQAQQNVKSNGAVPVPPNSSEQGHIR*(+)
MLLGAISAFALLELRVSGSDISEFFKTRCLVDLLRKLHLLLSDMALFR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017