Detail information of BGIOSGA021041_circ_g.4


General Information
CircRNA Name BGIOSGA021041_circ_g.4
ID in PlantcircBase osi_circ_016321
Alias Chr06:22108650_22110809(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr6: 22111522-22113681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA021041
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021041_circ_igg.1 BGIOSGA021041_circ_g.1 BGIOSGA021041_circ_g.2 BGIOSGA021041_circ_g.3 BGIOSGA021041_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA021041-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAAAATGCATCTTCTTTTTCTCTATCCATTAAAGCAGGACACAGTTAAAATAGCATGACACC
AGAAGTAGATACCTTATCGAGCTCCCCTAGCACCTCcctcacgattcacatatgaaggcccaac
acataaagtatcaatgtcagctccagggccatgaacctacaaaagcagaaacatcaaattatgt
aaatttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCACGATTCACATATGAAGGCCCAACACATAAAGTATCAATGTCAGCTCCAGGGCCATGAAC
CTACAAAAGCAGAAACATCAAATTATGTAAATTTGAATCAATCTACCATAAGAAATTGATAGAA
AATAAGAAATATGTGCACCAAATAGAATAGAAGCATAGAAAGGAAAAAAAAACAAAAAATGCTT
TGCAACCTAGCACCAACACTGATGTTTTAGGAGTAGCCTTACAATCACTGTTCTGCTCATATTT
ACATTATATACTATTAGTCCAGCGTGTAACAGCATCATATTCATGACCTCACTAGTTCTGAAAA
ACTTTATCTTTATCAAGTTCGGAATGCATCGTCTTTGTCAAACTACATAAGGGACAGTAAATAA
GTGAAGCTAGAAAAGTTAAAGGGGCTAGACAAAACATGACCAAATATTGACTTCAAAGATTACT
ATTAGTTCTCAAAACTGTTGGGGGTCTACTTGAAAGAACTCATGTATTATTTATTCCTATATTA
AGTTATCAACTAACGTAGCTACTAGCACCTACTTTTTGGAGCAATGAAATAAACATTGAGCTAA
AAAATTAGCACGGAATGACAGAAAATAAGAAACAGGCCTAATTATTTTAACAATGATATGATGC
TAAGCTCATAACAACTAACACTGATGGAGCATGACCACACAATAAGAGGCACATGATATAGGAT
ACTAAGGCCCTGTTTGTTTCAGCTTAAGATTATTATAATCTAGATTATTGAGTCGGATTACTAT
AAGCTGGATTATAATAAGCCGACATAGAATAAGTTGTTAGCTGTTTGTTTCTTTGGATTATTAG
CTGGTTGTTAGGTGTTAGCCACCCAATAATCTAAAAAAAGCACCTTTAGAGTGGATTACTAGAT
TATAGTAATCTGGCTTATAGATTGTAATAATCTATCATAATAAACTATCTGTTTGTTTCAGCTT
ACTCTTAATAATCCAGATTATAATAATCCTAAGCTGAAACAAACATGTCCTAAGATCATACGAC
CCAGGATCCAGGTTGTATACAACCACAAGCTGTACTCTAATCACCTTTAGTGTCCCCCACAACC
TAAAAGTTTTACTAAGAAGCTGTTTCTCATTACAATTATGATCAAATAATTTGTGGCAGCCATG
TCAAAGGTTGGTAGTGGACAAAATTATTTTTGAACTCAGAACTAAATCACTTAGATATGAAATC
CCTATCATTAGGATTGCTCCTATCCGCCATCAGTTGCAACCAAATGGCAGGTGGCTTAATTATA
GTAATTTAATCCTGCTCCTACTATTAACACAGATTATATTGTGGACCGAGAAAATTCATATATT
ACTCAGGCACAAGGAAATTTAATCTCTTCCTCTGTTACTAATGTTGATGCACAAGGAAATTTAA
TCTCCCTTTACCTGTTAAATGACAGGAAGTTCATATTAATATTAAGGCACAAGAAAATGTAAGA
AATCTCTATTCCTCTATTAAATGGCAGCAAAGGACACTATCAATAGCTCCCACTAATATGTAAA
ACGATAAGAGTCAGACAAGGCAAACAATACTACAGAAAAAACTATGGAGGTGTATGTGGTAGGA
AAATAACAGAAACACGGGATATAATATAATAGTTACCCCTAAACGGTATGATCCAAACGTGAAG
AGTACAGCATTTGCTTCTTCAACCATCTGATCAGTGTAACCTCTCTGGCTGGTTAACTGCTTCA
CCCAATCTTTTACAATCTGCAAGTCCAAACAAGAACGATGCTTAGCAGATGATTTTCAACTTAC
AACAATATACCGTAGAAAAAAAATGGCGGAGCTACATTATGAGGGGATGGTGCCCAGGAACCCG
GTTAAAGTTCGTCTATTTCACCATATGTGCCCCCCCCCCCCCTAAAGGCTACAAACTCAGGCAC
CCGCATCAGCTTAAACTCAGTCAAAGCAGAGTAAAGCAAGTAAGAGGCACCCCTCTCCATTTTG
TTCTAGCTCCGCCCCTGGTACAGGGGGACGAGTGCTAATAGCACATTTAGAACAGCAACTACCT
TCTAAGGTACACATCAAAATGCATCTTCTTTTTCTCTATCCATTAAAGCAGGACACAGTTAAAA
TAGCATGACACCAGAAGTAGATACCTTATCGAGCTCCCCTAGCACCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021