Detail information of Os01g0528000_circ_ig.5


General Information
CircRNA Name Os01g0528000_circ_ig.5
ID in PlantcircBase osa_circ_001991
Alias Os01circ13734/Os_ciR1627
Organism Oryza sativa
Position chr1: 18983893-18988403  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI, SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0528000_circ_ig.1 Os01g0528000_circ_ig.2 Os01g0528000_circ_ig.3 Os01g0528000_circ_ig.4 Os01g0528000_circ_ig.6
Support reads 7/7/4
Tissues leaf and panicle/root/seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGGTCGTACTAACTTCCCATAATTTGCTGCAGAAACTAATCCTTTTTTGCATTGCTTGAAGG
CAGATGATGTCCCTGATTTCACCTTGGATGATCCCTaaaagattaattgggaagaccacatttc
gaaaaattcagcagagtggggttggcagatggctgtgtgcaaaatgtttgatgagcgtcctgtt
tggccaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 182
Transcript exons: 18983893-18984049,18988379-18988403
AAAAGATTAATTGGGAAGACCACATTTCGAAAAATTCAGCAGAGTGGGGTTGGCAGATGGCTGT
GTGCAAAATGTTTGATGAGCGTCCTGTTTGGCCAAGGCAGTCACTTTATGAATGTTTGATTGAT
GATGGTTTGCAGATCTCACAAAGCCAATTCCTGATTTCACCTTGGATGATCCCT

Genomic sequence AAAAGATTAATTGGGAAGACCACATTTCGAAAAATTCAGCAGAGTGGGGTTGGCAGATGGCTGT
GTGCAAAATGTTTGATGAGCGTCCTGTTTGGCCAAGGCAGTCACTTTATGAATGTTTGATTGAT
GATGGTTTGCAGATCTCACAAAGCCAATTCAAAAGGTCTCATTATTCCTTTCTGTTTGTACAAT
TCCATCATTATTTTGGATATGCCTTTCCATCTGATATGTTCTTCATTCATTCTTTCTCTTGGGT
ATGTTTTGTTTATCTGCTCAGGCTTCTCTTTAGAGCTGGATATTACTTTTCTACTGGTCCTTTC
GGCAAATTCTGGATCAGAAGAGGATATGATCCTCGAAAAGACCCAGACTCACGAATGTAAGCAT
GGGCCTCCTTTTGTAATTGTTATTTATTTGGCACCTTTTTCCATTGCATTATTATAGACAGAAA
AAGTGTGTTTTGTACGTAATGCTTCTCATGTTCCCCTTTTTAGATGGAAGCATAAAAGTGACCA
TTGATTAAGATAATAATAGAATAATTAAGTACAATGCACAAGTGACAAGAAAAATAATGTGTCT
TACCAGATCATTCTCCAAGTGAAGCACAGATTTCTGGATCGGTAGCAATAGTGCTTCTGCCTTT
GCAATCTGCAATTGTATAGTTTGATGATTTTTTTTAGATGGATTGGGTTAATCAGGTTACGGGG
AAACTGGCAGGCCAGTTAATTGGATCTGGATGCCAGTTTATTGGACTATATCATGGCTAACATC
AGATGATTTGGATCAGCATAAGCTATATTCCAGCTAACTTGTCAAACAACTGCTCTGATCCTAG
TTTACTAATTTATAATGTGCCGCATTGCCACTAACAATATTGTAATGATGATTTGGTATTTTGA
AATAATAGCATAAGTGCACACCAGGCAGGTAATAGCACTAAGCCTGCAGCTCTGCATCCTTAGT
TGGTACTCCCTCCGTCCCAAAATATAACTACTTTTAGCCCTTAGGAGTTGTCCCAAAATATAAC
AACTTCTCCCCCAACATTCTCTTCCCAACCAATCACAACCCTCCACCATTCACTTTTTCCACCT
ACCTCCACTACTCATCCAATCACAACCCTCCACCATTCACTTCTACCTACTTTCTTAATAACCA
TGTCTAACTCTAAAACTTCTTATATTCTGGGACGGAGGGAGTAGCCATTATTGTGATGTCAACA
TTCCATCTGTTTTCTCATGATAACGTAAAGGATTGATTGGGTAGACATGATTACTAGTGGGATA
TGGTTTCTGTAGTTCTCAAGGTTTTAGGGTTGAACCATCACAAACCACCCCCCCCCCCCAAAAA
AAAAAAAAGGAAACAAAAGGGAAAAAAGGAGATATCTCTGGCATTTCATTGCTGTAGTTCTCTT
TCATCCATGATTCATCACCATGGTCTGTTCTGGACCAGCAGAGTGTACAAACATAATTATAATT
TGAAAACATTGTAATGTTTATAGCAGTAAATAGTCAAGTCCTTGTCATTAGAGCAAGAGGGAAT
AGAATGATATATTCATTGTATATGTTATTGTCAGTAGATGTTCTGGTTAACTCTGACCTTTCTA
TCTGTAAATTTCAGAACCAACTCAAAATAAGAGGATGATTTATGTGATCATTATTATTCTGCTC
CTTGTCCACCAATCATGCAGAAATAATTGGTCTAGTATTTAGGAAGGTTTCTGTAGTTCATGCA
GCAATTATTATTGATGCAGACAATTTATTAAACAAAAGTTGCGATTTGCTTCCCAAATTCCGAT
GTTGATTTTTGGTTCCAAAAATAATTTAGGTTCTTTAGGTATGCTTTCGTTTTATGTGGAAGTT
TGGAGGATAAATCCATTTCATCTGAAATTTGAGGCTTTAAAATGATTAACATTTGGCATTTTCT
TTTCTATACTTTTCTTTAAACTGAGGAAAGTTTTATTTCTGCCATTTTTAAAAGCTGTTTGGAA
TGTTTTGTTTTTGGGTGTAGGTTTCAGAGAATTGATTTTCGCATGCCCCCTGAGCTGAGGAATC
TTCCAAGGAAGGAGCGTAGGTTAGTAATATTTCTTCCTGTGAGTGATATCTTCTTTTAGCTTGA
GAAATGTCATATCAGTATATTGTTTTATAAACATCTAGTTCATTATCTGTCGATTGCTCCATCT
TCCCTCAATTTAGTGCCCCAATCCTCATTTTCCTTTCTGTTTATATTTTGGTTTACGATACAGC
ATTATGCTATAAATGATATTCTTATTAATCACTATAGCAACTGGCACACCATCATTTTTAGTTT
TCCATACTAATATGTGGACAATTGATCATATCTTTGACAAATGAGAGTACTCTGCTTAGTTTTA
TATCTGTGATAACATTATTTGTAATTTTAAGAAGACAGTTTTGTATCTTTTTTTTATCGTGGTA
AATACATACACATTTCCATGAAAAAAATATCTCCAGTGACTCATTTGATTTGTGTCGATAATTG
CATTGTCCGTTGTAAATTTAGTGTCTGGATGATTTTGTTCAAAACTTCAAATCCTTTTTCTTTG
CATACGAAGGCCATTTCCATTGCAGAGATCTTTAGTTTTGTTTTTTTGGGCGCTTTTAGACCTG
AAAAGTGGACAGAGATGTGCAAGCTTGAAGTGATGCCATCGAAGAGTTTCATCTTCCTGCAATT
ATTTGAACTGAAGGATGACTTTATTCAAGCGGAAATTCGAAAACCTTCTCATCAACCAACTTGC
TCAGTGAGTAACAAAAACAACTATGTTCAGGCTTTTTCTCGTTTGTTCTACCTGGACACTGTGT
CTGAGGTTTTCACAGTACCTAAAACTGCACACCGAACATATCTTAACTGTCAATTCCTCCATTC
ATTTTGGTGTTTTCAAATGTGTGTCATCAAACTCAGTATCTGAAACTATATTAGTAGATATTTG
TTAAATGACTCATGAATTATATTTTATTAGGATATATCAATAGGGTTTTCTAAAGGTGTAACAT
ATCTGATTTCTGAGAGACTGACTCAAAATAATGTTAAATAAAAGGGGGAAAGATATGTACTTAT
TAATTTTTCTATGGACACTAAATTTTGGATGCGAAATATACTTAATACATCTTTTCTGTTTAAT
TGGAATTAACTATGTTGAGTCTTATTGTTGAGTACTCGAGTTCTGGGATCTATTGCTGATCTTG
AGGATGTATATCGTGATCTCATTATGAATTATTACAAGTATGTTGTTAAAGAAAGTACCTGGCT
AGTTTGTGCTGCTGCAAGCAGGGCTTTTTGTACTTCAGCAACTTTTAGTCTAGATCATGCATGC
TTAATTTTGCAGTGGTCATTTCATGTCCAACGATCTTGATTCATAGCTAGTACTCCCTCTGTCC
CAAACTATAAGGCCTATATTTTTTTTTACATGGTCTTCAATAACATACTTTGACTAGTATTTTA
TTCCATTCTATGATCCCAACAAATATGAAATTAGCATCACATGAAAGTACTTTAAAATATGAAT
CTAGTATATAACATGCATAATACTTAGTATAGATATAGTTAGTATGATTATTAGTCAAAAGCTA
CAAAGTTCGATTTTTCTTAAAAAGGGGGGCACCGTATAATTTGGGACGGAGGGAGTACTAGATT
TTTTTAGTGATGTATTATATAATAAAAAATAACTGATTCTTGTGTAGCATTTGACAGGTTGGTT
TTGTAAGCCGATGATTAAAACCTTGAGATTGCAATTGAGCATACGGTTATTCTCATTATGCCCT
AATGAAGATGCCAAAAACTTTTTGAGGAATGCCTATGAACTTATTGAAAGGTCTAAGAAGCAGG
AAGCACTTTGCAGATCTCAGCAACTAAAGGAAAATAAGGGTATTGTTAAGTTTATTCCCTTTTG
TCTTCTCAATACTACCAAAATGCATTTTGTTCGATATGTATGGTCATAGGGCACTCAGAACATA
ATGGTTTACATTTCATATTTTGGGGACATGCTCTGAGATATGAGCAGTATGAACATATCGCTGC
TCTGGATGGCTTAACATATTTGCTGTTCAGTAAAATTCAGAAAAAGCCGGGTATCATGGTTCAA
GTTGCACAACTATCGATTATGTATTCTACTGTTTTGTACTTTTATTCTGACAGGCATGCCAAAA
GCTCAGGGCAGATGGCTCCCTGTTTGTATGGATGAGTGTAGATACTTGTTGGTTTTTTTTTTTT
CAGAGATGCTTAACCACATGTGACCTGGTTGTTAAATCCTTTTCTCCAGAAGCATCTGACAGAC
ATAATGGAACTGAGGATCAAGCTGGTGGCAACAACTCTGATAGTGAGGATGCGGAGGATGATGA
AGAGGAAGATAAAGAGTCAGATGGCTATGAATCTCCACCTATGGTATGCCATTATTTTTCATGG
TCGTACTAACTTCCCATAATTTGCTGCAGAAACTAATCCTTTTTTGCATTGCTTGAAGGCAGAT
GATGTCCCTGATTTCACCTTGGATGATCCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.306984209
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA