Detail information of BGIOSGA030195_circ_g.1


General Information
CircRNA Name BGIOSGA030195_circ_g.1
ID in PlantcircBase osi_circ_007950
Alias 9:2056276|2061593
Organism Oryza sativa ssp. indica
Position chr9: 2056276-2061593  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA030195
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA030195_circ_g.2 BGIOSGA030195_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA030195-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAGGAGCTGAACTAGAGCTGCAGGGAAAAGATGGGAATGGAAGCAACTTCAGCTCTCTCCTC
CTTAGGTGCAGTGCAGTGGCACGAGAAGAAAAGAACctggccgtgctgacggatatggcgaagg
agcctagccagaaaagcattgttgcagattgtagaactatcacagacaagtgcgacatgacggc
gtgccctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021