Detail information of BGIOSGA001480_circ_g.1


General Information
CircRNA Name BGIOSGA001480_circ_g.1
ID in PlantcircBase osi_circ_009874
Alias Chr01:20497247_20503150(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 21953575-21958512  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA001480
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001480_circ_g.2 BGIOSGA001480_circ_g.3 BGIOSGA001480_circ_igg.1 BGIOSGA001480_circ_g.2 BGIOSGA001480_circ_igg.3 BGIOSGA001480_circ_g.4 BGIOSGA001480_circ_igg.5 BGIOSGA001480_circ_igg.6 BGIOSGA001480_circ_igg.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TA-TA
Number of exons covered BGIOSGA001480-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAATGGGGAAAGAAAGTAAGAGCAATCATCATTCCACTTACCATTTGAACCAACCCCATACT
CACTATCTTAAATTGTGTTTGAAGTAATCTATCAGGcctggtgacggtataccacatatgctaa
cccaaagaatattaatatgaaaggaagcaaaaatggtgtcaccacagcatagacaagtccgagc
aagaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTGACGGTATACCACATATGCTAACCCAAAGAATATTAATATGAAAGGAAGCAAAAATGG
TGTCACCACAGCATAGACAAGTCCGAGCAAGAAATAGAGCTGTATTTGAGGCTCATTTGAGTCA
AAACCAATGCTTCCAGGGTCCATTGCTTCTTCTCTGTCTTTCTCAGTCTTGACCAAGAAAAAGT
TTTTCAAGTGGAAGATTATCAATGGTTTCAATCTTAAAATTTCACCAGCTACCCCAGCCCAACC
ATCAACCATTACGTATGTTATAAAAAAGGTTGCTTTCATTGGAATTGCTTCACCAATTGTCCTT
GGTATTCTGCAAAGAGGCAAATAAGTACAGTTGAAAAGGAGTATAAGAGTTTCTTCAAAAAAGA
AAGGAAATACAATAGGAAATTGTAGCACAAATGAAGAGCATGAAAGGCAGGGCAGCAGAGCAAT
GTAAAAACAATAGGCAAACGTCAGTGACAAAGCAAGTTTCCTTATTAGTAAATGATATGATGAA
TGTGCACCTTCGTGCCACTTTTTTCACGGTTCATGTTTAGTTCTGAATGAACAAAAAACACCCA
TGTATATGCGCTCTAGAATGGTTGGTGCTACTCCCTCCCTCACTCTCTTCTTTAACTACAGCTG
GCTCATGTAAATAAATTGCAACTGCCATCTATGTCATAGGTAACAGCCAATAGAATTGCCTGCT
GTCTCATGTCGTGCAAAAATTTTAAGGCTTGAGACACATCTATATTGTAACTAGCAAAAGAATG
CAACTATCAGTTTGGCATAGTCAATATTTTTTTGTTTTGTCAACTACCTCTATGAACAAAACAA
AGGAAAAAAATATCAACACATTGACATAATTTATTGTACACTTCTATCTATGGTTGGTGATGTT
CTATGGTTTAGTTGAGCTCAATCAGAGAGATAGGATGGCTTGTAAAATTAAATTAAATTGTGGT
ATCAGGACATATATAAATTGCAAGCATACAGGATAATGGATTGAAGGTGCAGCTTGTGGGGTAG
ACAAGAGGACATACTCATTTGCTGATTGGTGAAGAAATGTTTTGAGCTGCTCTAAAGCAGATCC
TGCAATAATGCTTCCCAAGAATACATTAAAGAACAAGAAGATATAGTACTTAAAAGCAGATCTT
CTCTCCAGTGAGGACACCGATGTCAATCCTTCAACTTTAGACATAAACATTAATATGCTAGGGA
GCAATATAAGGAAAATCTTCAGAGCAATTCCTGGCAGAAATCCTTGGATGAATGATTTAATAGT
ACGCCTGGGCAATAGTTGAAAAGAAAAATTGACATAAGTGAAATGACAAATCAACAACAGAAGA
ATGTAGAAGAAAAAAGTAGTAAATCAAATGTAAAGTTTATGAACTTGTCTGTTTAGGGCATTAG
GTGCTCAAAGATATACTTTGGCTTGGTAGGTTCCATGACTTGCTTGCTCCTCAAAGTGGTACAT
TAATGGATAAGTTGTGAGATTGGTAGATTGCCAAAACATTTTCATAATAGAGGAAAAATAAGAT
GCAAAAAACAGTGTTGCTTAGCATCAACCATTCAATGGACAGATTTCAGCAAGTACTGGATCAG
GTGTATAGAACAGACTTTAGCTGCACTAGAACATCAAGTTATTGATGGCCACAGGCAACAAAGC
AGGTGCAAAAGCACAACTGATATAATGCTAATTAATTTCATTCTAGCAAGTTTCAGTTGTATTT
CCAAAAGAAAGCAAGAATGAAATGTTAACAAACAATAAATTTGCAATGACTGGAAATTCACAAA
TTATGTGCCAAAATATATAACAGAAATACATCTGTAAAGAGTGCACAGTGCAGCAGGACTAAAC
CCCTTCATAGCATCCAAGCCATGTTTTCAATTCTTTAACAGTAAGTTCAAGTTCAACCGTGATT
TCATGCATACATTTCCTCAGTTTCATTCGGTAGGAAAAAGCCTCTGTTACCTCTGCATGATATT
TATCTTGAAGCTTACTTAAAGCCTTAAAGGACAACTGACCCTATGATATCTTGAAAGGATTTGA
TCATCAAAAGTTAACAAAAATATATTTTATCATTTTTTTTCTGCAATAACATTCCTTGCAAGTT
GCAACCCACACAGAAGTCTAATTTATTACATGGCAGTAGCACTTAAATCATATATTGGATGATG
ATAAGATCATAAAGCCATGTTCTGAAAATCCAATACTAGAAAAGCAGTATGTGGTAAGCTTTCA
ACTGAAAAAAAAAATTGAGGAACAACTGATAATAATTATTGCAGAAGAAAGAGATAAATGCACG
CACATTTCAATCAAAGGCTTCAGAAATGGAGCTGCCTTCTCAATCCCTTCAATATTTGCAAGGG
ACTGAACAAATGCAATCGGGAGCACATAAAAGAAGTTCAGGAAGAAGAATGCAACCGCAATTAT
CAGCCTCCTAATTGTCAGGTAAACAAAAGGAATAGAGAGGTTATCCCAATAGACATCACGAGGT
TCTGGGGCCCACTCGGTCAACCAGACAGTTGGATTACTGGTTTGCTGTGTCTGAGCACACACTG
CTGCTCCCCACCGCGACCGGAAGGAAACAAAGGCTGCTGGCACAACTGATTTTGGATCCTTCAT
AATCTTTCCACGTTCATCAGTTTCCTAAATATCATTTATAAGAAGTTAATCCGGTGGTTTATGG
TACTGGGGAAATCCTTTTAACATGTGAAACACAACATTCAACTTATACAGTGCTAATTACTAAT
AAAAGCTAACACATATTTGCCAATATTGATGGATGCAAAGACAAGAAAGAAAGACACTATTTGC
TTCAGTAAAATAGCAAGAAGCTTTACTTTTGTTAAGACACTATATGAAGTCAACTGTAGTATTT
TGAAATAACACTAGACTCAAAGCAGAATAATGCATTAGGAGGCACAGCACAAAGATATATGACT
TACTTCCTTTTCTATCCTCTCAATTTCAGATGTGTAGTATTCAATAGCATCCACCTTTGAACCA
AAACATCCAAGAAAACCAGTCTGGAAAAGAAGTATAGAAAAATAAGAAGAATAAATAAGGAATC
ATAAATAAAAATTATTCTTTTTTGTTTTGATAAAAACAACAAGAACTGTGTAAGAGAAGTAAAG
AGATTAACATGATCAAATTTAGCAACAACCTTTGTAGTAGGCCTTTGAGATGTATTTCTTTCAT
ATTTCAGCTGATAGTAATCAAGCCAATTCTGCATTTTCTTCTTCTCTTTGACCATCTTATCAAG
CTTATTTGCATTATAGACAACCTATACCAGTCCATGAAATGAATGATAAGAACATGGTAGTGGT
AAGCCATATCAGAGCATAGATTTTTTTTTTTTTAGTAACGATAAGCAGTTAAAACTAAGGAATC
AAACAGAACTACATTTGATTGCAGAAAGATAAAAAGGAAAGGCATATATGAAAGAAGTTAATGA
CATATAACTATTCACATGACTTCGCTATGAACTTTGAACTGACCAGACAGAAAGATCCAGTGAA
GCATAAATACCAGACTGTAAAATATAAATATTACCTGGTGCGTAAGATAATGGTCAGGATGGTT
TACAAGGAAGAAATGTTCCACAAGCTCACCAATTGATTCATCAGGATCAGGCGGTATATTCCGC
ACAAGGACCTAAAAATCAACATTGGTCAATTAGTATATCATTGCTCTTCAGTCATAATCAGTTA
CAAAATCTTCCTTCACCAGAGGCTTTCCAATTTTAAAGATGAGTTCTCCCACCAACCTATCTTG
GTTAGCCACATTCAGCTTAGTTAAATATCTGGATAGAACCAGGTACTTGCAAGTTCAAAAGTCA
CATTAAAAATTATACCCAGTTGGCAGTTGAAACTATTGGTGCCCTAACTAATTCGTCTTTTCTT
TTGGATAGAAATCCATTTCTTAGAACATCTATAAGAATAAACAGTGCAAACATACCTAACAATT
TTCATTTTACAGAATGAGCAGTATACAGCAAGCATTCAATAATGATACTTTTATGGTTTTGATG
TCAACAACTCAATGTCCATAACATTTCAAGAATAGTGGTTTTCATGATTATCTTTTTTATCAGC
TGATATTTTACATTATTCAAGTTCCCACGTAGTCCCTCAATCACTATCCATGAGGTGAAGCTTT
TTTGTCTTCCATAGATGTGTAAAAAGACTTAAGTGGCATTATTAGATTCATTGTGAAATGAACA
CTGTTAGTGACATGACATGCTATGAACTAAGTAGAATTGGAAGGCACACTAGAAAGAAAATATC
AAGTAATATAAATTGAACTGCCAAATGCATAGAGTTCACAAGATCATACCGTGAACTGATCTGG
GCGGCGCTTCTCTGATGCAAGAAAGCGCAGACGCATTGTTGCCACTATTTCATACTCCCGTAAC
AGCACATAGCATGTCCAAAATGTGAAAACATAAGCCATGGTCAGGTGAGCTGCGAACCTGCATT
AAAAAAAAGTCACAGGCATAGTGAACACTAAAACAATAGTTTCAGAGTTGATGAACAGGGTATC
CTGCAAGACTAATGTGCTGCCTGGAAGGCTAATATCAACTATAACCACTCACCTACTTATCTAT
GGCAAGATCAAACCTTTGCGACTATTTGTCTAATTACTATTACAAAGTATCACACCAAACTGAC
ACAACAAGCTAGGTTAAAACTAATGGCCTTCAGAATTGCACACCCCACACATGCAAGCTACTAC
CGTTTCTGACTCCCAGCTCATGTATTATCACAGAGGCTGGGTGGTTGTTTATACTGCATGGTCA
TCTCTATACATCTTCGGATCTTCATGACTTTCCTAAGCCCAAATGGGGAAAGAAAGTAAGAGCA
ATCATCATTCCACTTACCATTTGAACCAACCCCATACTCACTATCTTAAATTGTGTTTGAAGTA
ATCTATCAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021