Plant Circular RNA Database

Detail information of 5_circ_ag.8

			
						 General Information
					
						CircRNA Name
						5_circ_ag.8
					
						ID in PlantcircBase
						ath_circ_045428
					
						Alias
						5:25183347-25186397
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 25183347-25186397  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G62690_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G62690_circ_g.4 AT5G62690_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G62700_circ_g.1 						
					
						Support reads
						3
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.8
ID in PlantcircBase	ath_circ_045428
Alias	5:25183347-25186397
Organism	Arabidpsis thaliana
Position	chr5: 25183347-25186397 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G62690_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G62690_circ_g.4 AT5G62690_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G62700_circ_g.1
Support reads	3
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAGAAGCAGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACGG
CTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGgtgagggaatggacgagatggaattcac
agaagcggagagcaacatgaacgatcttgtgtcagagtaccagcaataccaagatgcaactgcg
gatgaaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 757
Transcript exons: 25183347-25183490,25184690-25184897,25184983-25185255,25
185738-25185765,25185769-25185872
GTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGTGTCAGA
GTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGT
GAATATCAACAGGAGGGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGA
CCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACT
GGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAA
GGAAGCTGAGAACTGTGACTGCCTCCAAGGTTAGGGTTCCAGGTTTGTCACTCATTGGGAGGAG
GAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATCGCAT
GATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTGGAGCCTTACAAC
GCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAACGAGG
CCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTTGGTGATTTGAACC
ATTTGATATCTGCTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGA
CCTCCGTAAGCTTGCTGTGAATCTCATCCCATTCCCTCGTCTTCACTTCTTCA
						
					

						Genomic sequence
						
							GTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGTGTCAGA
GTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGT
GAATATCAACAGGAGGAAGAGTACTGAGAATAATTTAGTTATAACTGCTTTAAAAACAAAAACA
ATTTAGTCGTTTGCTACTTTTCTTTTTTTTAAAAGGAACACCTCAACTACCAGTTGTAGTTTTT
TTCTCTGCTTGTATTTGACATATCTGGTTGATGTTTCTGTACTTTTGTTCTTAATCTTGTTATT
GCCTGTGATGTTTCTATTAATATTTTCCAGTTGTACTGTCTTCAATCTTTGGTCTTCTATCCTC
ATCTTTCTGCTACCTGACTACCTCAGTACCTACTTAAGGACTTTAGGTTTGATCTGTTTGGAAA
ATAGATTAAGGTTCGGGATTTGTGACCTCAGGGCAAGTGCAGCTCCATATTAGACCCCAAAACA
AATTTATCACTGTTCTGAAATACAAATTCCCCAACATGCCTAGCTTTGAGGATTGATTGTTTCT
AAGCTATTTATTTTCTTTACCAATTCACATAAATACTTTAGGATAAAGTGGAAATTGTCAATAT
TCAAACACGTTCTCTTCCCTTTGTTAACAAGCAAAATATGAAAATAACATGTGCTCTTCCATTA
TTTCATTTTTTGCAACCCTTATGAATGGGCCCAAAGCCTGCCACAAACATGTGCACAATATTAG
AAAAGAAACTCTAAAAACAAAAACAAAATGAACATTCTTTTTTTTGCAATTTGTATTATAATAT
CAAAATAATATTTTAAAACTCAATTTAATATTGGAAAATAAAATAAAATTTGGAAACTAAACAG
TTACCATAGAGAAAGAAACGGACCATTTTTAAATTTTGAATTTCGAGAAAAACAAAATCGGCGC
CTCTTATTAGAGATAATTGGGGGAAAAAAACAAAAAACAAACACAGAGAGAGCAATAATAAAAA
CTCACTCACTCTCACTTTTTTCATTTCTTCAACAAAAAAAACCTAAAGCTCTCTTTTCTCTCCA
GATTTCGATTCCCGAGGCTCGAGAGAAAACCGTAAATCTCTTCTCCGTTCACTCAATCAACCAA
AGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAAGTTCTG
GGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCAGATCTG
CAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTCGTGCAG
TGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCAGACCTT
TCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGACACTAC
ACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTG
ACTGCCTCCAAGGTTATTCTTCTCCTTCTTCTTCTAGATCTGTTTGTATTAGGGTTGATTGAGC
TTTACTGGAGTTTTAAACTGCGAGATTTGCTTCTGTAGGGTTCCAGGTTTGTCACTCATTGGGA
GGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATC
GCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTGGAGCCTTA
CAACGCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAAC
GAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTAAGATTTCGT
TACCCAATTGTGCTCTTTTACAAATGTTAGATTAGTCGCTCTATGCTTAAAATGCTATGTCTAG
ATGGTGATTATGTTAATAATTGGTATCAAATTCAGATCTGCAAGTTTTCTCTATATATAACTTA
CTGTTTTGTCACTGTTTCTAGTGGTTTGTTCATGTCTATATCCTCTTGTCTTGTGTGCTATTGG
TTTATCAATGTTGAGCTCATCACTATAAATCCTTAAGCTGCTCTTTAATCTTATTGGAACAAAA
CTTTCCGGTGAAGCTGCAAGTACTTTCTAGTTTAATCTTATATGTTGCTTGCTGTTACATATGG
GATATGAATTCATTGATGACTATCGATTTGTGAAAGTATACTGTCTTCTTTATAATATACTTGT
TTCTGCAAGATATGTTGCTATGCTCATCATGTTGTTTGTTGTATGTGTCTATATGGCTTACATA
CTTGGTTCATTCTCTGTGTGCAGTTGGTGATTTGAACCATTTGATATCTGCCACTATGTCTGGT
GTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGTAAGCTTGCTGTGAATC
TCATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGTTTTGCTCCTCTCACCTCAAGAGGTTC
ACAGCAGTACCGCTCCCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACTCCAAGAACATG
ATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGTTCCGTGGCAAGA
TGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTTCAGAACAAGAACTCGTCCTACTTTGT
GGAGTGGATCCCCAACAACGTGAAATCAACAGTCTGTGATATCCCACCTACTGGTCTGAAGATG
GCTTCCACTTTCATTGGAAACTCAACATCGATCCAAGAGATGTTCAGGCGAGTGAGTGAGCAGT
TCACAGCTATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACAGGTGAGGGAATGGACGAGAT
GGAGTTCACAGAAGCAGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGAT
GCAACGGCTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAG
						
					

			
		

Sequences
Splice junction sequence	ACAGAAGCAGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACGG CTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGgtgagggaatggacgagatggaattcac agaagcggagagcaacatgaacgatcttgtgtcagagtaccagcaataccaagatgcaactgcg gatgaaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 757 Transcript exons: 25183347-25183490,25184690-25184897,25184983-25185255,25 185738-25185765,25185769-25185872 GTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGTGTCAGA GTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGT GAATATCAACAGGAGGGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGA CCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACT GGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAA GGAAGCTGAGAACTGTGACTGCCTCCAAGGTTAGGGTTCCAGGTTTGTCACTCATTGGGAGGAG GAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATCGCAT GATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTGGAGCCTTACAAC GCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAACGAGG CCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTTGGTGATTTGAACC ATTTGATATCTGCTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGA CCTCCGTAAGCTTGCTGTGAATCTCATCCCATTCCCTCGTCTTCACTTCTTCA
Genomic sequence	GTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGTGTCAGA GTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGT GAATATCAACAGGAGGAAGAGTACTGAGAATAATTTAGTTATAACTGCTTTAAAAACAAAAACA ATTTAGTCGTTTGCTACTTTTCTTTTTTTTAAAAGGAACACCTCAACTACCAGTTGTAGTTTTT TTCTCTGCTTGTATTTGACATATCTGGTTGATGTTTCTGTACTTTTGTTCTTAATCTTGTTATT GCCTGTGATGTTTCTATTAATATTTTCCAGTTGTACTGTCTTCAATCTTTGGTCTTCTATCCTC ATCTTTCTGCTACCTGACTACCTCAGTACCTACTTAAGGACTTTAGGTTTGATCTGTTTGGAAA ATAGATTAAGGTTCGGGATTTGTGACCTCAGGGCAAGTGCAGCTCCATATTAGACCCCAAAACA AATTTATCACTGTTCTGAAATACAAATTCCCCAACATGCCTAGCTTTGAGGATTGATTGTTTCT AAGCTATTTATTTTCTTTACCAATTCACATAAATACTTTAGGATAAAGTGGAAATTGTCAATAT TCAAACACGTTCTCTTCCCTTTGTTAACAAGCAAAATATGAAAATAACATGTGCTCTTCCATTA TTTCATTTTTTGCAACCCTTATGAATGGGCCCAAAGCCTGCCACAAACATGTGCACAATATTAG AAAAGAAACTCTAAAAACAAAAACAAAATGAACATTCTTTTTTTTGCAATTTGTATTATAATAT CAAAATAATATTTTAAAACTCAATTTAATATTGGAAAATAAAATAAAATTTGGAAACTAAACAG TTACCATAGAGAAAGAAACGGACCATTTTTAAATTTTGAATTTCGAGAAAAACAAAATCGGCGC CTCTTATTAGAGATAATTGGGGGAAAAAAACAAAAAACAAACACAGAGAGAGCAATAATAAAAA CTCACTCACTCTCACTTTTTTCATTTCTTCAACAAAAAAAACCTAAAGCTCTCTTTTCTCTCCA GATTTCGATTCCCGAGGCTCGAGAGAAAACCGTAAATCTCTTCTCCGTTCACTCAATCAACCAA AGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAAGTTCTG GGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCAGATCTG CAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTCGTGCAG TGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCAGACCTT TCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGACACTAC ACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTG ACTGCCTCCAAGGTTATTCTTCTCCTTCTTCTTCTAGATCTGTTTGTATTAGGGTTGATTGAGC TTTACTGGAGTTTTAAACTGCGAGATTTGCTTCTGTAGGGTTCCAGGTTTGTCACTCATTGGGA GGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATC GCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTGGAGCCTTA CAACGCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAAC GAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTAAGATTTCGT TACCCAATTGTGCTCTTTTACAAATGTTAGATTAGTCGCTCTATGCTTAAAATGCTATGTCTAG ATGGTGATTATGTTAATAATTGGTATCAAATTCAGATCTGCAAGTTTTCTCTATATATAACTTA CTGTTTTGTCACTGTTTCTAGTGGTTTGTTCATGTCTATATCCTCTTGTCTTGTGTGCTATTGG TTTATCAATGTTGAGCTCATCACTATAAATCCTTAAGCTGCTCTTTAATCTTATTGGAACAAAA CTTTCCGGTGAAGCTGCAAGTACTTTCTAGTTTAATCTTATATGTTGCTTGCTGTTACATATGG GATATGAATTCATTGATGACTATCGATTTGTGAAAGTATACTGTCTTCTTTATAATATACTTGT TTCTGCAAGATATGTTGCTATGCTCATCATGTTGTTTGTTGTATGTGTCTATATGGCTTACATA CTTGGTTCATTCTCTGTGTGCAGTTGGTGATTTGAACCATTTGATATCTGCCACTATGTCTGGT GTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGTAAGCTTGCTGTGAATC TCATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGTTTTGCTCCTCTCACCTCAAGAGGTTC ACAGCAGTACCGCTCCCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACTCCAAGAACATG ATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGTTCCGTGGCAAGA TGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTTCAGAACAAGAACTCGTCCTACTTTGT GGAGTGGATCCCCAACAACGTGAAATCAACAGTCTGTGATATCCCACCTACTGGTCTGAAGATG GCTTCCACTTTCATTGGAAACTCAACATCGATCCAAGAGATGTTCAGGCGAGTGAGTGAGCAGT TCACAGCTATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACAGGTGAGGGAATGGACGAGAT GGAGTTCACAGAAGCAGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGAT GCAACGGCTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.551628396

Conservation Information
Conserved circRNAs	NA
PMCS	0.551628396

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.8

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