Detail information of BGIOSGA005663_circ_g.4


General Information
CircRNA Name BGIOSGA005663_circ_g.4
ID in PlantcircBase osi_circ_012261
Alias Chr02:31509947_31510312(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 32727538-32727903  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA005663
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA005663_circ_g.1 BGIOSGA005663_circ_g.2 BGIOSGA005663_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA005663-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCTAACCCCTCCACACAAGGTTCTGGTCGCAAAGTTTTGAGGTTAATTCCCATCACACTCAT
GATTGTGTTAATAGCAGAAACTCCTTCACATCCTGActgtatctgcgccaagtagaataaactc
agcagcatcattgccagtctccacgcctccaatagcagagagtgactgtccatcagcaaattct
tctttcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTATCTGCGCCAAGTAGAATAAACTCAGCAGCATCATTGCCAGTCTCCACGCCTCCAATAGC
AGAGAGTGACTGTCCATCAGCAAATTCTTCTTTCATCATCCTTGCTATCTGCATGACTTTCGCA
AGTGCTATAGGGTGCACGGCTCTCGCAGAATAGCCTCCAGGCGTGGAATAACTGTGGAATCAAG
TGGTTTTTATAAGAAAAAAAATGGTAACAGTAAAGGAATATGTTCCATAGGGAAAAAAAGAACT
CAGGGAATTGAATCTAACCCCTCCACACAAGGTTCTGGTCGCAAAGTTTTGAGGTTAATTCCCA
TCACACTCATGATTGTGTTAATAGCAGAAACTCCTTCACATCCTGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021