Detail information of BGIOSGA032547_circ_g.2


General Information
CircRNA Name BGIOSGA032547_circ_g.2
ID in PlantcircBase osi_circ_008788
Alias Chr10:3660253_3663921(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3040577-3044236  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.1 BGIOSGA032547_circ_g.3 BGIOSGA032547_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032547-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAATTAACCTGATTTTTGACATCTTGTTTCTTTTTTTCTATGATAACCTTTCAAGGTGTAAT
GGTGGACTGTGGATAATGTTGTGTTCGATTTTTAAGgaacttggatgaggtgcaatcgtacatt
ctggttaagagaacttcagaaaacactccaacagctcttgttgctgatactgaagagtttcttc
gcctggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACTTGGATGAGGTGCAATCGTACATTCTGGTTAAGAGAACTTCAGAAAACACTCCAACAGCT
CTTGTTGCTGATACTGAAGAGTTTCTTCGCCTGGTATGTTTATGTGTTTTTTCTCCCGTAAAAT
AGACTTCTTTATGCACTGCAGTTAATGCTGACTGTAGAAAATTAGAAAGTAAAATGCTGCAACA
TAATTCATCATGCAATTGCATATTTCTTTTGGAGGCTTTTTGTCTAATTTCTTTTCATACTACC
TGTTAGGAGTGCTGAGAGCCATCTATGTATTGGTTATACTTTAGCAACCAATAGTTAAAATTTT
GAATACACTTATGAATAGATTCTTACTTCATCAAATAATTTGAATCTGAGATCTCAAGAAAGAA
ATGTGCCAAGTTAAATTAAACTATAAAACTTCTAATCTTGCAACCAGAATTACTTTCTGGGGAA
TTGAATTGCTATCTTCTAGTTCTATCTTGTGACAATCCTCTCACTAAAAGTAAGGCATTATATC
ATGTGTAAATTGCTGCGCAAATTCCATTAAGCCATAAAATTTTACTATTAATATAGAAGAAATC
ACATATAGATTGAGATGTTATATAGGCTTGCAATTTCAAGTCAAAGTTTAATCGCATTTTCAAG
ACATAAAAAAATTGATAATTTTACAATTTGATATATTGGAAATTTGATTGTGTTCTGTTTTCAA
TTTTACTGGACTATATAATGTCACCTCATGGATATATGGTTTCGAAGAACTTTTAGAAACTTGT
GCACCTTATTCCCCGGGTATGGTTAATTTTAAACTCTGTGCATAAGTGCACATTTTGTATGCTC
AAACTGAACTGGATCTTATGCATTCTAAAGACGAATTCTCCAAAATGCATGATTAGATTAAAGG
AGTTAACAATTGCTGATTTAGGCTACTGTTTGTCTGGATGTGTACAGATTTATCTTAACTTAGT
TGAAAGGTTTATTAATTGTTATTGTTTATGTGATTCTGTCTACTATTCTTGAATAATGTTTCCC
TTTTTGAAGGTATCTGTACAATATTACCTGGAGCGTCAATGCTTGCTGAAGTGCATCCGAAGAA
TCTTTGTTCATGCAAGTAAGTTTTTGTAGAGTTAGGTTAAAATATGTTTGCAATATGCAACATT
AGTGAATGGATTTACCCTCATTCTCTGAAAAAATGTTTTTGGCAGCAAACCAAATTATTTCGTG
TTTCTTTTTTGTGTGAGAAACTGAGAATTCTAATGGATGATTTGAGTCTAGGAAATGATTCATC
TACATCTTATCTCTTCACTTGCAGTCCAGAAAATGACAACCGCACGTGTTTTAGACTTTTAGTT
AGTGTCATTAAAGTGAAAAGCGCACTCAAAGTGCAATGTCCTCATATTGCTTATGCACAAAGTG
CAAAAAGAGCGCGAGCATAAAAATATGAGTGTTTACCCCTAAGAAGAATACTCCATGCCTGATT
CTTTCAGCTATCGAGGATGACAAAAAAGTAAATAATATATAATGGGTCTAGGGGTGGTAATGGG
CCAGGGCCCCTGGGCCCTTCCACAACACATCTCAGCCCTTAAATATTTTAGCTAAAAAATCTAC
TAAATTTCAGCCCAACCCTTTTTATACCCAGACACCCAGCCCTTACATTTTGTAGGCCAAAAGG
TTGTGCCCATTACCACCCTTAAATGGGTCTTAATATGAGATTAGCAAACTGCAATTGAACAAGT
ATTGTTGCTTTATACATAGCATGCCACTTTGAAGATAATTTTACTTAGGAGTTCAACTTAATCC
TTCTGGGCCATATTCTGGGCTACACGACCCCTGCCCCATTTTCTATTCTTTTCTACCTGACAGC
TAGATGCGACTGAAGCTTGCACCTATGCACTTCAGTGCCTTGTGCTTAAGTGGTTAGCCCTAAA
GGTGCAGCGCCAGCCTCGCTGCGGCTGACGCTACTCAAGGCACTTTAGCTGATACGCCTTGCTT
TTGCGCTTAGGCGAGTGCTTTTTGTGCTGTTTTGAGTAAGGCATGAATTAAGGTTCAAAATCAT
GGCTGGTGTTTTATGTTTGAGTTTGACCATGTCATCCTAAATGTTAGTTAATGTTTCCTATTCT
TAAAGCTTATTTTTTTGCCAACTATGAAATATAAAAATGCTGGGAAATATAAAGGCACTTTCTT
CAAAATAGACATGCTTTTGTTTAACAAATGGCACTTGTGGTCTACTTGGTTTTAAAGTGCACAT
CTCAAGCTGTCTTTTTTCTCCATATGCAGATGATTGTTCTGATTCAATTGATGCCGTTAGAGAA
GAGGCCTCAGTTTTAGTTAGGGAAGAGGTGGAACAGAGACTACTATCCATTGTTCGAGATTCCC
TTGCATCTGCATTCTCTGTCAAAGGGGTATGTTATATTACAGCTCTAGCGCTAATTTTATGAAA
ATGTGGCCATTGCATGTCAATGTACCAAATTATCATTCTTGTATTATTCAGTCACGACAACTTT
TATGGTTCACTGTCCATCTTTAAATTTCAATTCCTGCTTCCTAGTTGGCTGTATTGCCTCCACA
TGTGTATGCCCTTCCTAAAGAAGTAGCTTGATATGATGATTGATTCAACTTCAGTACTCTGTCT
TAATTTCTAATATATTAGGAAATGAATGTCGTCTACAGCCTGAGATTCTAGGTGGTACATTGCG
ATATGTATATGCTTTATTTTACATGATGAAATGAATTTTTGAAGGGAGTTGACTAAAGTAATCA
CTTGATTAGAAAGAAATAGATATTCTGCAGAAGAACATAATCTTGTAGGGAAGGAATAAAACAA
TTAATGAAGGAATTGTTATACACAAGCGAAATCTCATTTTATTTTTCTCTGCTCTATTAGAGAA
TGGACTAATTTTGCTTCTCTACTGAACCCCTGATAGGTAAAGCTTAGACCAGCTCAAAACGGTC
CCAAAACAACAAAAACTTTTTATAAAATAAGCATAATCATTGCTAGCTACTAAAGAAAAGCGGG
CTATGCCTAGGTTAAATGGGTCCTAAGGATATATAATGAAAAACTAGGTTGGGATGGTTACTGA
GGAAAGCCCATGTGCTTGCCTTAAGTCTGCTGATTTTATTCGTAATAGACCATAGATGACAAAT
AAGTATGTTGTACTCAGTCAAGCTTTTGAACCTTCCATTTGCTGCAAAACAAATTTATGTTCAT
GGTAATTCTGTAGGGCAGAGCAAAACTAGTGTGTCATTTTCCCTAGAATCAACTTGAACTGCAC
TGCGCATATTTTAGCATCTTGTTAAATATTGATTTACATGATGAATGCATTTCCTGTAAACTGT
AGAAGTTCATTGATAGTATTAACGTGCCCTAGCTACCTGCTTGTTCGAAATATGTTTATGAGCA
ATAAATCTGCTTGAAGGTCATAATGTTGAGTACACAGACAAGTACATGCAATTGCCTTATACTC
TTTTGCCGTTGCCGTTGTGGTTTTGTGTCTTCTGCACACACTGATATACTCATCATTTTGCAGG
GAGCTGAATTGACGATTTCTTGGCTGGAAGAAACACTGATTGAAATTAACCTGATTTTTGACAT
CTTGTTTCTTTTTTTCTATGATAACCTTTCAAGGTGTAATGGTGGACTGTGGATAATGTTGTGT
TCGATTTTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021