Detail information of Os11g0586001_circ_ig.2


General Information
CircRNA Name Os11g0586001_circ_ig.2
ID in PlantcircBase osa_circ_009677
Alias NA
Organism Oryza sativa
Position chr11: 22166470-22166790  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0586001_circ_ig.1
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GG-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTTAAAAACAATTCTAGCCTAATGATGCCTTCTCAGAACAAAAAATGGTACTGTAACCCTTT
ATCCAGATAAAGGAGCAGAGCTCAAAACTTTACCTTgtaccattcatatctcaagtagctttgt
accttcagatcatctgtagatccgcctgtagattttatgcttaattcatttcaaaacagatctc
gcaccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACCATTCATATCTCAAGTAGCTTTGTACCTTCAGATCATCTGTAGATCCGCCTGTAGATTTT
ATGCTTAATTCATTTCAAAACAGATCTCGCACCAACTTAAGTTGATAACTTGCCAACCAAACTT
CACACTGATTGAATACCTACCTTATTGGTAACACGCCAATCAAACTTTCACCCCTCGAAGTTAT
CTGTTCATTTTTTTTCTTGTGTCAATTTTCCCTTAAAAACAATTCTAGCCTAATGATGCCTTCT
CAGAACAAAAAATGGTACTGTAACCCTTTATCCAGATAAAGGAGCAGAGCTCAAAACTTTACCT
T
Conservation Information
Conserved circRNAs NA
PMCS 0.246703011
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017