Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016982_circ_g.1 |
ID in PlantcircBase | zma_circ_008731 |
Alias | zma_circ_0001931 |
Organism | Zea mays |
Position | chr5: 181886627-181886965 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016982 |
Parent gene annotation |
Protein NRT1/ PTR FAMILY 6.4 |
Parent gene strand | - |
Alternative splicing | Zm00001d016982_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d016982_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.187915388 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
181886949-181886962(+) 181886817-181886629(-) |
Potential amino acid sequence |
MTRTGNRGGDCGGDGDGEVAAELGVGEEAADEGEQVERAHEVGHHGGGLGVGEVQLADEVRHQV HRDAHHAHALRQLRAQDQPGAQPASGPRLVRRVAPEVHGLPVVAAAVPTMTRTGNRGGDCGGDG DGEVAAELGVGEEAADEGEQVERAHEVGHHGGGLGVGEVQLADEVRHQVHRDAHHAHALRQLRA QDQPGAQPASGPRLVRRVAPEVHGLPVVAAAVPTMTRTGNRGGDCGGDGDGEVAAELGVGEEAA DEGEQVERAHEVGHHGGGLGVGEVQLADEVRHQVHRDAHHAHALRQLRAQDQPGAQPASGPRLV RRVAPEVHGLPVVAAAVPTMTRTGN(+) MGISMNLVTYLVGELHLSNSKSATVVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATV SGAGHGGYGGGDDGQAVDFRGNPADKSRTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGEL HLSNSKSATVVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATVSGAGHGGYGGGDDGQ AVDFRGNPADKSRTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGELHLSNSKSATVVTNFM GTLNLLALVGGFLADAKLGRYLTIAISATIAATVSGAGHGGYGGGDDGQAVDFRGNPADKSRTG GWLGAGLILGTELAERVCVMGISMNLVTYLVGELHLSNSKSATVVTNFMGTLNLLALVGGFLAD AKLGRYLTIAISATIAAT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |