Detail information of BGIOSGA028901_circ_g.4


General Information
CircRNA Name BGIOSGA028901_circ_g.4
ID in PlantcircBase osi_circ_018017
Alias Chr08:25999809_26000204(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 25967841-25968236  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA028901
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA028901_circ_g.1 BGIOSGA028901_circ_g.2 BGIOSGA028901_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GA-CA
Number of exons covered BGIOSGA028901-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGATTGTTTGTGATCAAATTCTTAGATTAACTTGTCATTATTTGTGAATCTCCAATCCTCAT
GGGTAATGGGTTCTCTTATGAAGGGTTCAGTCAACTggtactcctcaaattgcatattgcatgt
atgatcactgagcttgttatttcactgtcactcattatgaatgaaaatttggtgccagcaattt
gggacttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTACTCCTCAAATTGCATATTGCATGTATGATCACTGAGCTTGTTATTTCACTGTCACTCATT
ATGAATGAAAATTTGGTGCCAGCAATTTGGGACTTTGGCTGGACCACTTTTATCATCTATAAAC
ATCTGCATTGAAATATATAAGCTAAAGTTCAAGAATCTTTTTGGTGCAACTAGTACATATGTGA
TTTCAAGTAGTAAACGAATAGTAGATGAAGCCAGTAAATGTCTTCTCTAATTTTTGAGAATCAG
GTCTGAGTGCCAAGTCATTGCCATGTAGGAGTGTTATCAGTTAGATTGTTTGTGATCAAATTCT
TAGATTAACTTGTCATTATTTGTGAATCTCCAATCCTCATGGGTAATGGGTTCTCTTATGAAGG
GTTCAGTCAACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021