Detail information of Zm00001d044555_circ_g.1


General Information
CircRNA Name Zm00001d044555_circ_g.1
ID in PlantcircBase zma_circ_001598
Alias circ718
Organism Zea mays
Position chr3: 231676893-231679438  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d044555
Parent gene annotation Calcium permeable stress-gated cation channel 1
Parent gene strand +
Alternative splicing Zm00001d044555_circ_g.2
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d044555_T007:6
Zm00001d044555_T003:6
Zm00001d044555_T015:6
Zm00001d044555_T017:6
Zm00001d044555_T013:6
Zm00001d044555_T019:6
Zm00001d044555_T012:6
Zm00001d044555_T006:6
Zm00001d044555_T016:6
Zm00001d044555_T018:6
Zm00001d044555_T002:6
Zm00001d044555_T009:6
Zm00001d044555_T014:6
Zm00001d044555_T004:6
Zm00001d044555_T011:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTCTCTTGTGGTGCAGACTGGTTTTCTTGGTTGTTTTGGTACGAAGGTGGATGCCATTGAA
TACTACACATCAGAAATTGAGAGGATAGAAAATGAAgataaattcaatagaattttctcctaag
ctatttaaaggacaactatggctacaattcaagatataggactctctgcggctatcaacataat
gggtgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAAATTCAATAGAATTTTCTCCTAAGCTATTTAAAGGACAACTATGGCTACAATTCAAGATA
TAGGACTCTCTGCGGCTATCAACATAATGGGTGCTGTACTGTTCCTAGTTGCATTTGCTTTCCT
TCGACTGCAGCCAATCAATGATAGGGTTTACTTCCCAAAATGGTACCTCAAAGGTGCAAGAGAG
AGTCCAAGTCATGGGGGTACATTTGTCCGGAAGTTTGTCAATTTGGACATGCGTTCATACTTGA
AATTTTTAAGTTGGGTGCCTGCTGCTCTCAAAATGCCTGAGGATGAGTTGATTAGCCATGCCGG
TCTGGATTCAGCTGTGTATCTGAGGATTTACTTGGTCGGGTATGTGACTTGTACACCATGTACT
GTAGGCATGTTTTAAGCTTTTGTTTGTCATATCAGTTTCTCCAATTGTACCATAGGTGGGGGCG
TTATTAGTTATTACTACCAGTTTCCATCAATGGATAATTAGGTCTCCATTGGTCTAGGCATAGT
TGTAAATAGAGCCTCGGTTTACAAATGGGGAATCAACCTCATAATGAGCATTGGTTATTGTATT
ACCCTGCTACACTCCAGACAACATGGCAAGCTAGGCAAAAGAATGAACTGGTGCTGCCAATTTT
ATTCCTAGTTACATTGGCTAATTCAATTCTAGGTCTTTGCTCTATTTTATTATGTCAGCTGCTC
TATATTAGGTCACTAGTTTGCCAGTTGCATCTAGTCTTTAGGATTTTCAGATAAGGGAATTTAC
TCACTTTGATATGTCTACGGTTTATCAGTTGTTTTATACCTACCCACCAAATGTTTCGTGGAAT
CAAAACATTTGTACTTTATTCCCTTTGGTTCACTGATTGACACCCATCTTATTTTTTCTTTACA
TGTACTTATTTACTTTGTTTCACTTGTTACAGACTTAAAATATTTGCTCCAATCTCAGTTCTAG
CTTTCATTGTTCTTGTCCCTGTTAATTGGACCAATGATACTCTGCAATTCTCGAAGTTAGAGCA
CAGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAGGTTAGCACTTGTT
CTTTGTTTTTGCAACCATGATTCTTTGGGCCATTGCCTTGTATCCTTTTCTATTGATAGGTTCA
GGAAAGTTGTAAAATTGATGTAAAGAAGTTATATGGATGGGACTGCGCAATATGAACTGCTATC
CAGCCTCTGACAGAAACTGATTTTGGATAGCAAAAATGTGGTAGATTGCACATGGGAGAAAAAT
TAGGAACCAAAGTTCATAATGTAGAGTACACAGTACAAATTTGCACTTAAAAATATTTCAAGTT
CAACCATTAGATTTAGGGAAATGGTTTCAGATTCTAAAATAGTTTCAGAGTTTACAATCAATAC
ACCTTGTCATTAAAATTAGGGATTGCAGTTTTGAGTTCATATTGACTGCTCATGAGTCCTAACC
AATTTCTCTTTGTGAAGGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCT
GCTATGTACTGTTACGTGAGTATGAAGTAGTTGCAAAGATGAGACTGCGATTTCTTTCATCAGA
GAAACGCAGACCAGATCAGTTCACGGTATGACTAACCTATGATTGAGTTATGCCTTGAACACAT
AGTGCTATCCAGATACTTAAAGTTGAAATTTGTACTGTTACTGCATTTCACATAGATTTTGAGG
CGAGAACACGTTTCTTTTTTCCCCTAAACTGATCAAGTGGATTTTGTTGTTATGGGTATGACTT
GCTGTATGCGCTTACTCAATGATTATATTTTAGGTCCTTGTGCGGAATATACCGCCTGATCCAG
ATGAATCAATTAGTGAGCTTGTGGAACATTTCTTTCTTGTGAATCATCCTGGTCACTATCTGAC
ACATCAGGTAATAATAATTTATAACATAATTCATGAATATTCATGTTATGATCCCTTATTTTAT
TCTAGGAGTTTATCTATGGATTCTCCGCCGTGTAGTATGGTTTTGGTGTTTCTATGTTTGTACA
GATGCATGTTTCACAATTTTGGGTAGATCCTTGTTTTCTTCATTTAAGTTTGGTACATATGATT
CCTATTTAGATGGATTTTTGTTTGATTCCTTGTAATTTATTTTTAAAATTGTTTTTCTGTAAAA
CAGAATCAGACATGCTATGTTTGATTTATTGCATGCACTTATTTTGTAGGTGGTTTACAATGCA
AATAAACTTGCTAAATTGGTGAAAGAGAAAGCAAAGATGCATAATTGGCTTGACTACTATCAGC
TGAGATTTGAAAGGAATGCATCTAAAAGGCCTACTACTAAGGTTATTCCACACACAAAAAATAG
CTGCTCTTTCCCTTCATATGGTTTTGTTATATTTGAATCAAATATGAACCCTTTTAAAAAATTT
ATTCTATTTTTTTGGAACTCTCTTGTGGTGCAGACTGGTTTTCTTGGTTGTTTTGGTACGAAGG
TGGATGCCATTGAATACTACACATCAGAAATTGAGAGGATAGAAAATGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.143641068
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b