Detail information of Solyc09g065650.2_circ_g.1


General Information
CircRNA Name Solyc09g065650.2_circ_g.1
ID in PlantcircBase sly_circ_002915
Alias NA
Organism Solanum lycopersicum
Position chr9: 63829600-63834391  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc09g065650.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Solyc09g065650.2.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTGACGTACATTTTAGTTATATAATTCTCATCTTCATTCGGATATCCTTTCAAGCACCTCC
CAGAATCTTGATCCTCGAAGCAAATGACCATATTCTcttgtatgcaagcttcttcaagctttca
ttccaaccctccaggtgctggtccaagagagcctgtgttctagaactcacctgaaacacgtctg
gcgtaccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTATGCAAGCTTCTTCAAGCTTTCATTCCAACCCTCCAGGTGCTGGTCCAAGAGAGCCTGT
GTTCTAGAACTCACCTGAAACACGTCTGGCGTACCCAAAACCAGTTCTAAGATTACTACACCAA
CACTCCACATATCATACCTGTTAAACATAGACATAATGAGAAGCTCCACGAGACTAGTGCAGAA
TTAATGTTATAGAACAGTGGAGTACACTAACATAATAACAGCGCATATAACCAGAACCAAAATT
CACAATTAACAAGAATTGACATACTTCATGGTGGTGGGAGTCAGCCCTTGGTACCAACTTGCAT
TCAAAAGAGCTTCAGGTGGAGTATATTCATAAGTTTGTTCATCTCTGTTAAAAAGAAAAGGAAA
AAGAACTGAGATAAATAAAAAGAAATATCTAAGAATAAAAAAGGCGGTAGAATTCTTCAATACA
CTACAGAAAAATTGGTAAGGAGAAGCAAAGAGATTTTATGACCTATTAACTATACATTCCCAGC
ACAAAAAATCACATCATTTAGGTTATCAAAAAACTTCCCTAATGAATTCATGTTCAGCCTATAC
TTCCAGAAATTTTATGACCTCTTGACTATACTTCCAGATATTGTAGGAAGGCCTGCGCTTAGCC
CATAAATGGTAATGCTCAGCTGGTAATCACAGTGCGTGGAAATGGACAGCTAGAAACCAAACAC
TAGCAAGAGTAACAGAAGAACTAGAATAAGTGATACACTCCAGAAACCATACACAACATTACGG
AGAAGTGTTTTTCTTTTGGTTGGCGTGTCCCATGACATGTCATCCTTTTAGCTTTTGATATATC
ACCATCTTTAGATCCAACCATTTAAATTACTATGAGTATGTCCTGGATATGCTCTAAAGTAAGC
AGATAACAAGGGTGAGTGGTGGAGCCAGTAATTATTGATAGTGTGTCTGTGTGGTTGTCAGTTA
AATATACATGCTTAAGTAACATTCAGCCAGAAAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAAGGAACATAAAGCCGTCACATGCTCCTCATCGAATATGAACATAATAGGCAAGTATATAAA
GATGACCGCACCATAACTAGTGGTAGCAAATAAGGAACTCAGTAGTATTCTTAACTTAATAGTC
AATATTGCAAACTGATGGTACGCAAACATGACTGTAAATGACATCTGAATTCTATATCAGGCAA
ATATGTACAGTCCTTTTTTCTCTTTATCCGAATTTTTAATTATACATAAGGGTGAGGGGAAGGG
AAATTTGGTGAGAGGATTACAAGGGTCCTAACCAACTAACTGGGCTACCATGATTCCCAAATAA
GTACATTCTTTGATCCTAATTAGAAGAGAAGTAACCACTCACAAACTAGGGTTTACAAGTAAAT
GCACATTACAAGTTCAAAGCACCTTGATATCATTCAGTATAATGCAAAAAGAGCTGAAATGAAA
GATTCAAAAAATATAATACCTTGAAGGACCAACAGACCCATACAAGTGCTTCAGTGTGAACTCA
TCTACTGCACTACCGAAGTCAATAATACGCCTGAAAATCAATAAGGTCACTAAGAATAGGTTTA
TAAGAAAAGAAAGATTCTATAACAATTATTCATCTAATCGAACAGACTATCACTAATAATATAT
GCGTCAGTCCAATGAGGAACAAATATTGATGAGTAACTTCATTTAGAGTTTGTATATTCGTGCT
TCCCCTTTATTCGTAGAGACTTAAATATACAACTTTAAACCTTATCAAGAAAAAAGTAGATTAA
CGTTCTTTCCAATCCAAAAAGTACAAGTTAAAGAGAATCCACCCCCACCCCTACCAGGCCTCAT
TTTCTTCTCGTCTGAGTTCACTCTTTCATATCTTCCCCAGCTCCCTCACCTCCATCCTGTCCTT
TCTTTCTTCTTTATCTTGCCAGACCTCCCATTCTGAGGAAACTGCACAATATGATTAGCTTTCA
CTGAAACTAAAAACTCTTGAAACAAGGAAATTCCTGAAAGCAGGAAAACTGTAGTGTTACAAGA
TATTTGTTTAAAATTCCTGCCATCCTAAATTGTATCTATAACATCACCTATCCTTTGTATAAGT
CTGTTTGCACCAAAAAAATAAAATAAAATACAAAAGGCAATTCCATTTGATCTTGTGCACTAGT
TACTCAAATCCTCAAAACACCTGGAGTTCCTTTTCTTTTCAGATTGTCCACCAAATCCTTGCAC
GGATAATTCTCCATATACTCCTGTCTTCTGCCCGAACTCCTACTTCCTCCCAACTATGTAAAAT
TTCAGTGATCTTTCCAGACATTATTCAAGAGATGCCTCCAACACTGATGAAAAGTCCACAAAAC
TGAACTTTAGTTTTGCAGTGTAGAAATAGATGATTAACTGTCACTGCTTCCTCTCCACAAAGAA
AACATCTTCAGCAAAGAGTTATCTTTCTTCTTGCCAGATTATCTTGAGTAAGGACAGCTGCTTT
TGCTAATAACAAAACAAAGCAGGCTACCTTCTGTGGGATTTACGTCTTTCAAATGTGTTTACAA
GACCAGTCTACAATCTGAAAGTTTACCCAGCTCATCATTTTATAAGCATTCCTCTCACCTTGAA
TAAGCCAGAGATGTGTTCCTTCCATCTGAGCAAATCAGTCCCCCATGAAGACCACTAAAGGATT
CCAATATTTTGCAAAATTCTGTCATCCTCTGTATCTCCCAGTGATTCAGCATTCTTTTGGAAGT
GATAGCACTTCCTCCATGATCTATCCTTATTTCTACCATGGTCTTATGTTGATGCACCACTAAG
TTCACCAAGCTGAATATGTCTTGGGAATATTTGTTGGAGACTATAATTCCCTAGCCAGTTGTGT
TTCCAAACAGAGCTCTGTTTTCCATCATTCACTTGATGAATGAGCAGTCCTGGAAAAATGGCCA
GTGAGCCCTGATGGATCTCCATAGACTGACCCCCATATGGAGTGATAACCACTTTAATCATCCA
CTAGTCTTCCTCCCCATATTTTATCTTGATGACTCTTCCCCACAAAAGTTGGCTTTCTGGGATG
AACCTCCTCAGCCATTTCATCTTCAGAGCCTTGTTTTGTAATTTCACGTTTCTGAAGGCCACCT
TGCTTTTTACCTGTAGTTACTTCTTTCCAGTTGGCCTAGTGAAAGATTCTCTCCTTGTTGCCTT
GTCATAAAAAGGACCTTCAGATACTACCCAATTTCCAGTCATTTTTAGCATGTGATCACAAAAT
TGCTTGACGGCTGACTGCTTTTACGGAAAAAGAATGGGAATTTCAGCTTAGGAGAGACTTAAAT
GATTGGGGACTGGGTGAAGCTAGTGCTTTTTTGCAGAAAATGCAGACAATAATTATTTGAAGAA
AGCACGGAAGACACTTGGGTTTAATTGGAAAATAACATGGGAAGAGATATGGTGAATCCTGGCT
ATTGATGGTTACAAGATCAGTATCTTGATTCCGAGACATTCTGACCATGGAAATTGTTGTGGAA
ACTAAGGCCCCAAGCAAAGTTGCATGTTTGGGGTGGGTTGTAGCTTAGCATGCTTGCTTGACCC
AGGATAATTTGCAGAAAAAGGGATTCAGTATAGATGCTTCTTGTGTGAATTCGCTGCAGAATCT
CTTAATCATCTGCTGATATATTGCAATAAAACCTGGCAGATCTGTTCTGGGTGATGCCACAAAG
CTTTGAGGAATTACTGAACTGTTGGCGAGGACAAAATGTAAAGAGAAAACTCAAGAACAATTGG
AAAGTATGCAGGAGAGGAAGAAAAGATGTTATGGAGGAACAAAGGAAATGAATAAATTTGTAAA
ATTTAAATGTTTCCAGAACCTGTTCTGATTTCATGGACCTGTTAGATCACTTAGATGCTGTTTT
TGTGTAGGTCCTGATCAAGTACACAATATTTGTCATCTGTACTGTACCTTCTAGGTACTGATTT
CCTTAACTAAATTACTTTACTAAGACTTAAAACTTTTTGAAAGGAGGTGTTAGAAGTAAAGTGT
TCTCTTTGTTAGAATGTTAACGTCAAATTTACTAACAAACCTCATATTTTTGAAGCATCTACGT
CCTTTCTTACTAATACTCTTGATAGAGATACGAATGGAACTGACTCACTTAGATCAGTTCCTTT
TTGTATGAATGATCCTTATTATAAATAAAATTCTTCCGCTATAAGCAGTAAAAAATATGTGTAT
TGTGTTTGGACCAAAAAATAGTCTTGTATTCAGTGGATCATCAAGTCCTCAATATATATCTTCT
CTTCCTTTGTCTTTTACACAGGAGGAAATATTTAATCACTAAATTAAGAAATTCATAGGAGGAA
ACAAGACCACATTGTCGTCACAGAGATTAGTTTCATGAAATCCCTGGAAAATAAGAGTTACATT
TTCCGTATGGATAACTTTCCGACACTTGATGAAGTATCAAGAGATGGAATCCACAGGACTCTAA
TAAAACAGCTATGATGCAACGAGGTTTACACCAAACACAGGGGCACATTTGAGATCACTCGAGA
ATCCATTTAAACATCAAACAGCATTAAGCAGTTGTCTATAATGTAGAAGACAACTCAACACAAA
AGCTGTGGAAATAATAGAAACAGTATTTAGCCGTTATCTATAAAGTAGAAGACAACTCAACATA
ACAGATGTGGAAGTAAAAGATAATTGACGTACATTTTAGTTATATAATTCTCATCTTCATTCGG
ATATCCTTTCAAGCACCTCCCAGAATCTTGATCCTCGAAGCAAATGACCATATTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.148345786
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs sly-miR396a-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020