Detail information of AT1G80560_circ_g.2


General Information
CircRNA Name AT1G80560_circ_g.2
ID in PlantcircBase ath_circ_011323
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30289202-30289516  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G80560
Parent gene annotation 3-isopropylmalate dehydrogenase 2, chloroplastic
Parent gene strand +
Alternative splicing AT1G80560_circ_g.1
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G80560.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGTCACAAACAACATTTTTGGTGATATATTATCCGATGAAGCTTCAATGATCACAGGAAGC
ATAGGAATGCTGCCATCTGCTAGTCTCAGTGATTCGgcctcaatcttatggaggaaacgagtaa
cagcattagcctctgaatatcctgatgttgagctgtcacatatgtatgttgacaatgccgcgat
gcagcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTCAATCTTATGGAGGAAACGAGTAACAGCATTAGCCTCTGAATATCCTGATGTTGAGCTGT
CACATATGTATGTTGACAATGCCGCGATGCAGCTTGTTCGTGACCCAAAACAGGTACGTGTACT
TTGTATTTGCCAAACTAGTCAGCTTTGATGTGCGACAGGTGTAAATCCTTGCAATTATTTGATT
GTTTGATAAATGCAGTTTGACACCATCGTCACAAACAACATTTTTGGTGATATATTATCCGATG
AAGCTTCAATGATCACAGGAAGCATAGGAATGCTGCCATCTGCTAGTCTCAGTGATTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.311578679
Functional Information
Coding potential Y
Potential coding position 30289271-30289513(+)
30289483-30289204(-)
Potential amino acid sequence MYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSASILWRKRVTAL
ASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSA
SILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIG
MLPSASLSDSASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILS
DEASMITGSIGMLPSASLSDS(+)
MLPVIIEASSDNISPKMLFVTMVSNCFGSRTSCIAALSTYICDSSTSGYSEANAVTRFLHKIEA
ESLRLADGSIPMLPVIIEASSDNISPKMLFVTMVSNCFGSRTSCIAALSTYICDSSTSGYSEAN
AVTRFLHKIEAESLRLADGSIPMLPVIIEASSDNISPKMLFVTMVSNCFGSRTSCIAALSTYIC
DSSTSGYSEANAVTRFLHKIEAESLRLADGSIPMLPVIIEASSDNISPKMLFVTMVSNCFGSRT
SCIAALSTYICDSSTSGYSEANAVTRFLHKIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017