Detail information of GLYMA_03G151400_circ_g.1


General Information
CircRNA Name GLYMA_03G151400_circ_g.1
ID in PlantcircBase gma_circ_008071
Alias circRNA4979
Organism Glycine max
Position chr3: 36632030-36633973  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_03G151400
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues pod
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRH67167:1
KRH67168:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTACCTAAAAATAGTATTAATGTGACACAGAATGTGGTGGTTGCTTGTGAGGATATGATGAA
GCATGCAGTTGGTGACAGCAGCAAACCTAATGACACagctttctgcaatcatgccgatgttgaa
gcatttactgaagagaagaaacaatctcttgccaaacgttcaggaaggggtggtgaatttgctt
gtgcagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCTTTCTGCAATCATGCCGATGTTGAAGCATTTACTGAAGAGAAGAAACAATCTCTTGCCAAA
CGTTCAGGAAGGGGTGGTGAATTTGCTTGTGCAGTAAAGGAGATTATTGAATGTTATGAAAAGT
TGAGGACGGAGAATCAGGATGGTGACACTAGCTCTGGTGGTGAAGTTGCTATTGCAAATGTGTC
GTATTCACTTGATCCATCTGCCAACACAGGGTTAAAGGATCAGACGGATGCTCCTTTCACAATT
AATTCACAAATGAAATCTTCAAATTGTGTGATTGACAGACCTGAGGATGCTGTTGCATTGAAGG
ATGAATCTTATAATATAGAGGCATCACTGGAGGAAGCTACTGATAATGCTATTATGACTGCAAC
TGTAAAATCACCTTTTTCAATAACCCAGAGAAATGCACCAGTTCGAAGGTCTAGAACTAGAAGC
ACATTACAGGTCCAAAACTTTGTTGTACCTTGTGGTGATGGTGGAAATAATGTTGGCAATAGTG
ATGACAACATATCAGCTGATGCAATTCAGGATACATCTATAAGGAGTAAACGTATCAGGAAATC
ACCTGACCTTTTACGTTGTGATGATACTGATTCACCTGCATTTGCCCCAAATGTTAGCATGGAG
GACAATGGTTCTGAAATTATTACAATCAATTCTGATGCCTTTACTTTAAATGAGGGAAGTACGA
TAGATTCTAATTTAAAATTTGAACAGTCTGAGCCTATTGTTTGCCCTGAAGGTGAAGGTCTTGA
TCTAGAAATAAAGGCTGTAATCAACAAGAATAAAAGAAAACCAAACCAGAAGAAGGAAACTAAT
GATTCTGGTGCTCAGAATGCCAGCCAAAGTTTGCAGAATATGGGTGGAAATTCGAAAGAAAGAT
GCCCTGACCAAGATGGAGATGAACACTTGCCCCTGGTGAAACGAGCCAGAGTTAGAATGGGTAA
ATCATCCACAGAGGCAGAACTCAATAGCATTTCTCAAGTTCAGGTTAAAAGTGGCGAGGAAGAT
ATTACTGACTCACCACATCAGATAATCACATGCTCAAATTGTGAAAATGGCCTTGCTGAAGGAG
GCCCATCAGTGTTGAACAGTACTTTGGTTAATGTTTCTCCTTCTAACTTAATAGCCTCGTATTC
TGAAAATGGGTCTCAAATTTGTAAAATTAAAAAAGACCAAATGTTTGGCTGCTCTGTGGATGAT
GAAGCTGCTTTACCTCCATCTAAACGCATCCATCGTGCTTTAGAAGCAATGTCTGCCAATGCTG
CCGAAGAAGGTCAAGCTTGCATGGAATCCTCCTCCTCTATAATGACATTTAGTGGTAGATGCTG
TATATCTGCCATTAAGAGATGTCCTTGTATGACTGTTAATAATCAAGGAGTTAATGAGTTAGAA
CTGCAAAGGTTGGTTTCTTGTGGCATTGATTCTTCTCATGTTAGTGTGTGTAGTTTCTCAACTC
GTTCAAATACAATTATTTCCACAGAGAATGAGTTATCTACAGAAGTGGATAAGCATTTGGTCAA
GTTCCAACATGAGTCTGGGAAGGATGTCATCCCAGGTGCTAGTCAGCAAGGTGGTGAAGATATT
AGTGATTCTGTTGTCTGTCATCCTGCCAAAATAGATTCACTAATACAGTCACATGGAAAAATTT
CTCCTAATCTTGATGTGAAATGTTGCCAAGTTGGAAACAATAAGGATTCACCAGGTCCATCATT
GTTACTAAATGATGATGACAATGCCAGAACTTCAAACCATTCAGATGCATCTGATACAGTAGAG
CATGTTGGAATAAGTCTCGATCCTGTGGCAGGCAACAGTGAAAGTGATAAATTGGTACCTAAAA
ATAGTATTAATGTGACACAGAATGTGGTGGTTGCTTGTGAGGATATGATGAAGCATGCAGTTGG
TGACAGCAGCAAACCTAATGACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.023254677
Functional Information
Coding potential Y
Potential coding position 36632296-36633970(+)
36633941-36632127(+)
36632047-36633800(-)
Potential amino acid sequence MKSSNCVIDRPEDAVALKDESYNIEASLEEATDNAIMTATVKSPFSITQRNAPVRRSRTRSTLQ
VQNFVVPCGDGGNNVGNSDDNISADAIQDTSIRSKRIRKSPDLLRCDDTDSPAFAPNVSMEDNG
SEIITINSDAFTLNEGSTIDSNLKFEQSEPIVCPEGEGLDLEIKAVINKNKRKPNQKKETNDSG
AQNASQSLQNMGGNSKERCPDQDGDEHLPLVKRARVRMGKSSTEAELNSISQVQVKSGEEDITD
SPHQIITCSNCENGLAEGGPSVLNSTLVNVSPSNLIASYSENGSQICKIKKDQMFGCSVDDEAA
LPPSKRIHRALEAMSANAAEEGQACMESSSSIMTFSGRCCISAIKRCPCMTVNNQGVNELELQR
LVSCGIDSSHVSVCSFSTRSNTIISTENELSTEVDKHLVKFQHESGKDVIPGASQQGGEDISDS
VVCHPAKIDSLIQSHGKISPNLDVKCCQVGNNKDSPGPSLLLNDDDNARTSNHSDASDTVEHVG
ISLDPVAGNSESDKLVPKNSINVTQNVVVACEDMMKHAVGDSSKPNDTAFCNHADVEAFTEEKK
QSLAKRSGRGGEFACAVKEIIECYEKLRTENQDGDTSSGGEVAIANVSYSLDPSANTGLKDQTD
APFTINSQMKSSNCVIDRPEDAVALKDESYNIEASLEEATDNAIMTATVKSPFSITQRNAPVRR
SRTRSTLQVQNFVVPCGDGGNNVGNSDDNISADAIQDTSIRSKRIRKSPDLLRCDDTDSPAFAP
NVSMEDNGSEIITINSDAFTLNEGSTIDSNLKFEQSEPIVCPEGEGLDLEIKAVINKNKRKPNQ
KKETNDSGAQNASQSLQNMGGNSKERCPDQDGDEHLPLVKRARVRMGKSSTEAELNSISQVQVK
SGEEDITDSPHQIITCSNCENGLAEGGPSVLNSTLVNVSPSNLIASYSENGSQICKIKKDQMFG
CSVDDEAALPPSKRIHRALEAMSANAAEEGQACMESSSSIMTFSGRCCISAIKRCPCMTVNNQG
VNELELQRLVSCGIDSSHVSVCSFSTRSNTIISTENELSTEVDKHLVKFQHESGKDVIPGASQQ
GGEDISDSVVCHPAKIDSLIQSHGKISPNLDVKCCQVGNNKDSPGPSLLLNDDDNARTSNHSDA
SDTVEHVGISLDPVAGNSESDKLVPKNSINVTQNVVVACEDMMKHAVGDSSKPNDTAFCNHADV
EAFTEEKKQSLAKRSGRGGEFACAVKEIIECYEKLRTENQDGDTSSGGEVAIANVSYSLDPSAN
TGLKDQTDAPFTINSQMKSSNCVIDRPEDAVALKDESYNIEASLEEATDNAIMTATVKSPFSIT
QRNAPVRRSRTRSTLQVQNFVVPCGDGGNNVGNSDDNISADAIQDTSIRSKRIRKSPDLLRCDD
TDSPAFAPNVSMEDNGSEIITINSDAFTLNEGSTIDSNLKFEQSEPIVCPEGEGLDLEIKAVIN
KNKRKPNQKKETNDSGAQNASQSLQNMGGNSKERCPDQDGDEHLPLVKRARVRMGKSSTEAELN
SISQVQVKSGEEDITDSPHQIITCSNCENGLAEGGPSVLNSTLVNVSPSNLIASYSENGSQICK
IKKDQMFGCSVDDEAALPPSKRIHRALEAMSANAAEEGQACMESSSSIMTFSGRCCISAIKRCP
CMTVNNQGVNELELQRLVSCGIDSSHVSVCSFSTRSNTIISTENELSTEVDKHLVKFQHESGKD
VIPGASQQGGEDISDSVVCHPAKIDSLIQSHGKISPNLDVKCCQVGNNKDSPGPSLLLNDDDNA
RTSNHSDASDTVEHVGISLDPVAGNSESDKLVPKNSINVTQNVVVACEDMMKHAVGDSSKPNDT
AFCNHADVEAFTEEKKQSLAKRSGRGGEFACAVKEIIECYEKLRTENQDGDTSSGGEVAIANVS
YSLDPSANTGLKDQTDAPFTINSQMKSSNCVIDRPEDAVALKDESYNIEASLEEATDNAIMTAT
VKSPFSITQRNAPVRRSRTRSTLQVQNFVVPCGDGGNNVGNSDDNISADAIQDTSIRSKRIRKS
PDLLRCDDTDSPAFAPNVSMEDNGSEIITINSDAFTLNEGSTIDSNLKFEQSEPIVCPEGEGLD
LEIKAVINKNKRKPNQKKETNDSGAQNASQSLQNMGGNSKERCPDQDGDEHLPLVKRARVRMGK
SSTEAELNSISQVQVKSGEEDITDSPHQIITCSNCENGLAEGGPSVLNSTLVNVSPSNLIASYS
ENGSQICKIKKDQMFGCSVDDEAALPPSKRIHRALEAMSANAAEEGQACMESSSSIMTFSGRCC
ISAIKRCPCMTVNNQGVNELELQRLVSCGIDSSHVSVCSFSTRSNTIISTENELSTEVDKHLVK
FQHESGKDVIPGASQQGGEDISDSVVCHPAKIDSLIQSHGKISPNLDVKCCQVGNNKDSPGPSL
LLNDDDNARTSNHSDASDTVEHVGISLDPVAGNSESDKLVPKNSINVTQNVVVACEDMMKHAVG
DSSKPND(+)
MQLVTAANLMTQLSAIMPMLKHLLKRRNNLLPNVQEGVVNLLVQ*(+)
MIAESCVIRFAAVTNCMLHHILTSNHHILCHINTIFRYQFITFTVACHRIETYSNMLYCIRCI*
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a