Detail information of BGIOSGA024009_circ_igg.1


General Information
CircRNA Name BGIOSGA024009_circ_igg.1
ID in PlantcircBase osi_circ_017267
Alias Chr07:24132087_24133685(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr7: 21692701-21694299  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAGTCTACATTGCCATCCATATATGTGCGGTTCACTCCCATACCACAGAAAAACCCCCCAT
GATGAAACTCAATTGAAAAGTACTTTGATCCAGGACccttttgtttgtctgtcataatggtcca
tggagaggtgttcaatatcccaagttcagtcttcaaggtatcaagaaaccatgtccatgtgctg
aaagactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTGTTTGTCTGTCATAATGGTCCATGGAGAGGTGTTCAATATCCCAAGTTCAGTCTTCAA
GGTATCAAGAAACCATGTCCATGTGCTGAAAGACTCAACTTCTACCACAGCCATTGCAATGGGG
TATATGCAGTCATTGGGATCAATTCCAACTGCTGTCAACAATTGACCTCCAAATTTGGTCTTGA
TGTGGCAACCATCCAGACAAATGATTGGCCTGCAACCACTGAGGAATCCTCTCTTGCATACATC
TAGTGAGAAGTACAAGCTACTAAATTTGCCCTCATCTAACCTAAGATAGAAAGTACTCCCAGGA
TTGGACCTCCTTAGTTCATTGCCATAATCCCACAACAAGTTGTATTGGGCTATTTCATCACCAT
ATATCTCTTTTAGGGCCAGCCTCCTAGCTCTTGCAAGCTTGCTTCTTGAAGGAGTCAAGTTCCA
CTCTTTTTGTACTGTCTTTGCAAAGCTAGGAATGGTCATCTTCCCATCAGCCCTAAATGACTCA
GTGTACTTTTCAGCTAACCATTTTGCAGTACACCTTTTTAGAATCCACTCCTTCTTGCATTTGT
GATGGGGCTATATGTCTTAACAATGAAGGCCTTTGCCCTGCTGTCCATTGAAGCATAAAAGTTC
CAGGGGCATCCTTCTGCACAATGTGCCTTGATCCTAGTTCTATCATTCCTGGGCATCTTTATGT
CCACCCTGTTCTTCATGCTATATTCAGAGATAGCCTTTCTAACTAATTCAACTGAAGAGAATAC
CATGCCTACTTTGAAGATTGGGTTGTTAATGTCTTCAGGATTAAAAGACTTAAACTTCAAGTTG
AACTCATCATCATCATCATCACTTGGCAAGTGCAGTTGTTCATCATCACTTGTGTCACCTTCTG
ACAAATCTGCCACAACTTTCTTGCCCTTCAACACACTACCTGCAGCCTTCTTATGGTTGAATTT
CTTCCTATCCCCCTCTTCCACATCACCATCCACATTTTCCTCAAAGAGGTCATCATCATCATCC
TCCCACTCATAATCACTATCAACAAAATCAGAATCAGACTCACTGTCATCTGAGTTTATATGAA
AGCTCAACTATTTCTTCACCAACATCCAATTCTTCATGCACTACATGTCCATCAGGTGCATTCC
TAGGGTTTCTATCCTCACTTTCTGCCTCCTCTGTCTGCTGGCACTGTCTACTAGGGTTGAACAC
CTCTGGCAACTCAGCTTCTGGGCTCAGAACAATGTCATCTATATTTCTTCCTGAGACATGATTA
GTATGATCAAAATAGATGACAAAATTCTTGATTTTATTTGACACTGATTTCATGACATTGATCT
CAACTTCACTGTCTATGATCCTCAATCCATCAGACATGTTCTTTCCAGGCAATAACCAATAATT
TTTCAACTTTCCATCAGAGTCATATCCAAGCATGGCAACAAAGTCTGCTAAATGTAGACATCTA
CCCCAATCTCGAGAATCAATATTGTCAAACCAGTCTACATTGCCATCCATATATGTGCGGTTCA
CTCCCATACCACAGAAAAACCCCCCATGATGAAACTCAATTGAAAAGTACTTTGATCCAGGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021