Detail information of BGIOSGA016904_circ_igg.1


General Information
CircRNA Name BGIOSGA016904_circ_igg.1
ID in PlantcircBase osi_circ_014642
Alias Chr04:28438032_28438862(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26654279-26655109  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016904_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTCTACAGGCTGAATTGTTAGGCTCTCATTATAACATTTCCATACTATCTCTGCAGAAGGA
TATCAAGAAGCTGCTTGGGAGCTCTTAAACCTAAAGgtggcttaactaactccaactacactga
gctgagccagctgtatgagaagtacaaggtccaaggtgtgtctttgacccgttgcctttgtata
tctttgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCTTAACTAACTCCAACTACACTGAGCTGAGCCAGCTGTATGAGAAGTACAAGGTCCAAGG
TGTGTCTTTGACCCGTTGCCTTTGTATATCTTTGTATATTGTAATTGCCTTTGCATATTGTACT
CCTTCACCATGGAAGTTGGAATAATTATCTAGTTCATGGTCACATGGATCATTAAGCTTTAGTT
ATTATATGTGCTAGTAGTTCTTCACTTTAAACAATTCCGGTTGTTGTGGTTCGAACCGCTAAGG
AATATTACCAATGTGTGATTTGTAGGCTTTGAGATATTGGCTTTCCCGTGCAATCAGTTTGGAG
GGCAGGAACCCGGCTCCAATGAGGAGATTGTCCAGTTTGCTTGCACTCGCTTCAAGGCTGAGTA
TCCCATTTTTGACAAGGTAAGTTAACGCAATACTTTTAACTCAATCAGAGTAATTATCAGTGTG
AAGCAAAATGATATAAGTCACATGTTTTATCTATCGAAGAGGTGTTTCTGTGGAGTAGCATTGA
GTCTCTTTTTTTTTATCTGTCAGGTTGATGTCAACGGTAACAATGCTGCACCCCTGTACAAGTA
TCTGAAGTCTAACAAAGGTGGGCTTTTCGGTGATAGCATCAAGTGGAACTTCTCCAAATTCTTG
GTTGACAAGGAGGGTCGCGTGGTGGATCGCTATGCGCCCACCACCTCCCCTCTTAGTATTGAGG
TAATGTCCTGCACTACCACTTGCAATCTCTTTCTACAGGCTGAATTGTTAGGCTCTCATTATAA
CATTTCCATACTATCTCTGCAGAAGGATATCAAGAAGCTGCTTGGGAGCTCTTAAACCTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021