Detail information of AT1G01050_circ_g.3


General Information
CircRNA Name AT1G01050_circ_g.3
ID in PlantcircBase ath_circ_000006
Alias 1:31933-32670
Organism Arabidpsis thaliana
Position chr1: 31933-32670  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G01050
Parent gene annotation Soluble inorganic pyrophosphatase 1
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G01050.1:5
AT1G01050.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAGCTACGGATCTTCTTGACAAGGATGAGAGAATCCTCTCGTTAAGACGAGGAGCTGGTCG
CTGCAGCCTCTGGTTATCTTTAGTTTCTTCACTCATctggtcaatcataggcattaatccaatg
gctctggcacgcagaaaacaacccggaagcacaggttcctacacaaagataataatatatattt
gaaataca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 393
Transcript exons: 31933-31998,32088-32195,32282-32347,32431-32459,32547-32
670
CTGGTCAATCATAGGCATTAATCCAATGGCTCTGGCACGCAGAAAACAACCCGGAAGCACAGGT
TCCTGCATGATGACTAAGACATCAATGGGGTCATTGTCTTCACACAATGTGCGAGGAACAAAAC
CATAGTTGTGAGGGTACACAACTGATGAGTAGAGAATACGATCAACCTTGATGAGTCCTGTCTT
TTTGTCAAGCTCGTATTTGACCTTGCTTCCTTTAGTGATCTCAACAACCACATTGAAAATCTGT
GGAGCTCCAGGTCCAATCTCAAGATCATGCCATGGATGAGCAGCTACGGATCTTCTTGACAAGG
ATGAGAGAATCCTCTCGTTAAGACGAGGAGCTGGTCGCTGCAGCCTCTGGTTATCTTTAGTTTC
TTCACTCAT

Genomic sequence CTGGTCAATCATAGGCATTAATCCAATGGCTCTGGCACGCAGAAAACAACCCGGAAGCACAGGT
TCCTACACAAAGATAATAATATATATTTGAAATACAAAAAATTGGTGCAAATAGTATAGGGATA
ATATGAGAAAGAAAGAAAGAGTAATACCTGCATGATGACTAAGACATCAATGGGGTCATTGTCT
TCACACAATGTGCGAGGAACAAAACCATAGTTGTGAGGGTACACAACTGATGAGTAGAGAATAC
GATCAACCTGAATGAGAGAATTCAAACTTGTTGAGATTGATTTTGCTATAAGAAAACCATTCAT
ATAAAAAATAAACTTTGTTCTCATCTAACCTTGATGAGTCCTGTCTTTTTGTCAAGCTCGTATT
TGACCTTGCTTCCTTTAGTGATCTCAACAACCTAATAATCATCCAAAGATAAAATGATTAGAGA
ATCTAATAACAACATACTCTGTTTAGAACAAAGAGTAGGAAAAAACTTACCACATTGAAAATCT
GTGGAGCTCCAGGTCCTAGATAGATTATCCAGACTTATGATTTAGTAACAGAATACAAAAGTAT
GAAATCAAAAAGTAGCATGTTTAGAATGATTTATATACCAATCTCAAGATCATGCCATGGATGA
GCAGCTACGGATCTTCTTGACAAGGATGAGAGAATCCTCTCGTTAAGACGAGGAGCTGGTCGCT
GCAGCCTCTGGTTATCTTTAGTTTCTTCACTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.308187757
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020