Detail information of Os08g0564800_circ_g.3


General Information
CircRNA Name Os08g0564800_circ_g.3
ID in PlantcircBase osa_circ_038150
Alias Os08circ16957
Organism Oryza sativa
Position chr8: 28300558-28301019  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os08g0564800
Parent gene annotation Coactivator CBP, KIX domain containing protein. (Os08t0564800-01
)
Parent gene strand -
Alternative splicing Os08g0564800_circ_g.2
Support reads 4
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os08t0564800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACAGCACCATTCTGCTGACCAATTAACTGATTTTGTTGTAAATTTTGCTGCTGGCCCATTA
ATTGATGTTGCAAAGGAATGTTAGGCTGCTGAGTTGgttgagcttggaattgtgacataagatg
ctgctgtgattgctgaagttggttatgttgtgattgaggctgcatcaaacccagtgatgactgc
tgagcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAGCTTGGAATTGTGACATAAGATGCTGCTGTGATTGCTGAAGTTGGTTATGTTGTGATTG
AGGCTGCATCAAACCCAGTGATGACTGCTGAGCATGCTGCTGCTGCTGTGGTTGCTGAACTGCC
TTTGTTTGTAGCATATGCATTCGTTGAATGTTCGGAACATTAGGCACAGTTCCAAGAAGCTGTT
GTTGCTGCTGATTTTGTTGCTGCTGCTGTTGTAGAGTTGAAATATTTGCCTGGGAGCCCAATTG
TTGCTGCTGGTGCGAGGGCATAGACTGCTGGTTCAACATCTGCTGTGTCTGCTGCATATTCAAA
AGATTATTCGATTGAACTGGTAGTCTCTGTTGCTGTGGCATATCCACAGCACCATTCTGCTGAC
CAATTAACTGATTTTGTTGTAAATTTTGCTGCTGGCCCATTAATTGATGTTGCAAAGGAATGTT
AGGCTGCTGAGTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.701160534
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015