Detail information of BGIOSGA033138_circ_g.1


General Information
CircRNA Name BGIOSGA033138_circ_g.1
ID in PlantcircBase osi_circ_008523
Alias Chr10:19762306_19763611(MH63RS2), Chr10:20215585_20216890(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16832399-16833704  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033138
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033138-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAATAACATTCGTAGAGCCAGCAAAACAATGACTGAGCAAGAAGCTAGGCAGATACTCGGT
GTATCTGAGCAGTCAACTTGGGAAGAGATTGCACAGggcagggaagcttattgcaaacttgatt
gtcatgggctctgggattataggaagagctatgctccaagcataccggaaagcacttgatagta
agtttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAGGGAAGCTTATTGCAAACTTGATTGTCATGGGCTCTGGGATTATAGGAAGAGCTATGCTC
CAAGCATACCGGAAAGCACTTGATAGTAAGTTTTTTCATCCATTGCAGTCTGTATATAGAGGCT
ACCTCTTTGTTCCTTGACTGAGTAGATAGAAACATGAGATGTGGATTGATATCAGCAAACTTTA
GTGAAAAGACCGCTTACGTGGAGCAACAATCGCTCAAAAACTAAAATGGACGGTAATTTTTCAT
TTTGTTATATACTGCACCAAGTTCTATAAAATGAACCATAAACGATGTTATCAAATACTTAGTA
ATTAAAATTCCTTATATTGACATTGTCTTGTCAAATAATTATTAATTAAAATTCCTCATATTGT
CATTGTCCAAGTAAGATATGACCCTGTTTTATAGATGCTTGCATTTGGACTATAACTTTTTTGG
TATTACTTACACATATAACGCTATCTCCCTCAATATCAATTTGGTTTTATGTTACCTGTTGCTC
ATGAGATTTGTTGTTTGATTTCTTCTCACATGCGAGACATATTTATGATACATGGATGTCTAGC
ATCTAGGGGCTTAAAACTGTCATAACAAGTTTGAACTTTCATTGTTTACTAATATCATTCTGTG
CTAGCTACTTACAAGTTGGGTCCACTTATGTTTTAACAATTTGGTACCTGCAGTTAAGTCAGTT
CTTCGGTTTTATGATTTTATGAAGAAATGGATATCTTTGTTTTTTTTGCCTAACTTATGGTAGA
TTTTAAAGAAGTACCATAAAGGCACAAACTCTATTTTACTAGTTTTAATGGTACTTGTTTGCCT
GGATTTTATTTGCCTAATTTGAACATAAATGTCCTCTGCAATACAATGATACAGAACTCACCTC
TGTGTTATCTAAGAACTCTGATTTGCATAATTATGAGATCAGGCCAACTATATATCTGATTAGC
TTGTATCTAAAGTTTTACAACTCTAAAAACATGTTCACAACTAACTTCTGAATATCAGAAAATG
GAAATATGTTAGTACTTATTAATAGCCACCACAAGACAAATATGACCTTTCTTAATATTTTCCT
GCCAAATCTTTGACTGTAGGAGAATTGTTATTATTCTTTTTTGAAAGAAGGATGACTTATGTTA
GTTTTCCTCCTATATTCTGCCAGATGCAAATAAAACTGGTGTGGCCCATGAAACAATTAATAAC
ATTCGTAGAGCCAGCAAAACAATGACTGAGCAAGAAGCTAGGCAGATACTCGGTGTATCTGAGC
AGTCAACTTGGGAAGAGATTGCACAG
Conservation Information
Conserved circRNAs osa_circ_007155
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021