Detail information of Os07g0656100_circ_g.2


General Information
CircRNA Name Os07g0656100_circ_g.2
ID in PlantcircBase osa_circ_035069
Alias NA
Organism Oryza sativa
Position chr7: 27591417-27592658  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0656100
Parent gene annotation Similar to predicted protein. (Os07t0656100-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0656100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACCCGACGGCGAACGTGGCCGCGGCGAGGTGGACCAGGAACACGCACAGCGTGATGCCATT
GGTGTACACGCGCGAATTGAGCGACGCGAACGCCACcatgaggtatccgacgaagaaggcgagc
agcgagacggtggcggtgtagtgcttgtgcgtggcgaacgtccacgaccccgcgagcgcgacgc
agagcgcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1152
Transcript exons: 27591417-27591653,27591744-27592658
CATGAGGTATCCGACGAAGAAGGCGAGCAGCGAGACGGTGGCGGTGTAGTGCTTGTGCGTGGCG
AACGTCCACGACCCCGCGAGCGCGACGCAGAGCGCGCCGCTGGTGACCCCGGTGAGGAAGCACA
CCGAGCTCGTGATGTCCGAGTCCACCAGCGCCGGCATCCCCTGTAGCCTCTCGAACTGCTCCCA
CGTGCTCCTCGACGCCTGCACAAACCCCCTCCCGTACGCCGCGATGTGGACGAAGGCCCAGCTG
TTGCCGAACTCGAAGATGGCGTTCATGACGTGGAGGCAGCAGTGCGCGCAGGAGAACATGAACT
CGTCCTCGCCCTCGAGGAGGTTGAGGCCGCGGGCGACGATGCGGAGCGCCTCGATGGTGGGGAC
GAACAGCGAGCCGAGGCAGGCGCTGCCGAGGTTGTAGGAGAGCGCGCGCTGGAAGCTGAACTGC
ACGCTGGACTGCATGCCGCGGAGGTAGTAGAGCGCGATCACCCGGCTCGCCGTCAGGTTCGCCA
CGTTCCGCATCACCTCCGCCGTCCACATCAAGCTGAGCACCAGGCCGAGGATGGTCAGCCCCGG
GAACCGGTAGTTCGCCGCGCCGATCACCGCGACGCACCACACGGAGATCCACACGAACCCGGCC
GCCACCATCAGGTAGGCCGGCCCGTTCAGCCCCCGGAACTTGTCCACCGGCTGCACGGCGCGCT
CGAACACCCGCGCCGTGAACCCGACGCGGCGCGTCACCCAGCACGCGTACAGCCCCGTCCCGAT
GGAGAACATCACCATGGCGACGCCGAGCCCTACGGTGGCCGGCATGGAGAAGCACATCAGCATC
GCGCCCACCGCCAGCGTGATGCCGAAGCTGGACCACAGGATGACGCCCACCATGGCGCGCGGCC
ACGCCCGCACCGCCTTCTGCCACGCGAACGCCAGCACGATGCTGAGCGCCACCGCGCCCTCCAC
CGGAGGCAGCCATTCCCGCAGCAGGCTTCGCTCGCGCTGCGCGTTCCGGGAACGCGGGTGCTGC
ACGATGTCCTTGACGGCCCTGAACACGAAGAACCCGACGGCGAACGTGGCCGCGGCGAGGTGGA
CCAGGAACACGCACAGCGTGATGCCATTGGTGTACACGCGCGAATTGAGCGACGCGAACGCCAC

Genomic sequence CATGAGGTATCCGACGAAGAAGGCGAGCAGCGAGACGGTGGCGGTGTAGTGCTTGTGCGTGGCG
AACGTCCACGACCCCGCGAGCGCGACGCAGAGCGCGCCGCTGGTGACCCCGGTGAGGAAGCACA
CCGAGCTCGTGATGTCCGAGTCCACCAGCGCCGGCATCCCCTGTAGCCTCTCGAACTGCTCCCA
CGTGCTCCTCGACGCCTGCACAAACCCCCTCCCGTACGCCGCGATCTGCAAACACCACCACCCA
TCCGCCATTGTCACCACAAACTTAAACCATGGAGCAACAAGAACGAAGAACGTGTGTCCGTCGA
AGCTCACGTGGACGAAGGCCCAGCTGTTGCCGAACTCGAAGATGGCGTTCATGACGTGGAGGCA
GCAGTGCGCGCAGGAGAACATGAACTCGTCCTCGCCCTCGAGGAGGTTGAGGCCGCGGGCGACG
ATGCGGAGCGCCTCGATGGTGGGGACGAACAGCGAGCCGAGGCAGGCGCTGCCGAGGTTGTAGG
AGAGCGCGCGCTGGAAGCTGAACTGCACGCTGGACTGCATGCCGCGGAGGTAGTAGAGCGCGAT
CACCCGGCTCGCCGTCAGGTTCGCCACGTTCCGCATCACCTCCGCCGTCCACATCAAGCTGAGC
ACCAGGCCGAGGATGGTCAGCCCCGGGAACCGGTAGTTCGCCGCGCCGATCACCGCGACGCACC
ACACGGAGATCCACACGAACCCGGCCGCCACCATCAGGTAGGCCGGCCCGTTCAGCCCCCGGAA
CTTGTCCACCGGCTGCACGGCGCGCTCGAACACCCGCGCCGTGAACCCGACGCGGCGCGTCACC
CAGCACGCGTACAGCCCCGTCCCGATGGAGAACATCACCATGGCGACGCCGAGCCCTACGGTGG
CCGGCATGGAGAAGCACATCAGCATCGCGCCCACCGCCAGCGTGATGCCGAAGCTGGACCACAG
GATGACGCCCACCATGGCGCGCGGCCACGCCCGCACCGCCTTCTGCCACGCGAACGCCAGCACG
ATGCTGAGCGCCACCGCGCCCTCCACCGGAGGCAGCCATTCCCGCAGCAGGCTTCGCTCGCGCT
GCGCGTTCCGGGAACGCGGGTGCTGCACGATGTCCTTGACGGCCCTGAACACGAAGAACCCGAC
GGCGAACGTGGCCGCGGCGAGGTGGACCAGGAACACGCACAGCGTGATGCCATTGGTGTACACG
CGCGAATTGAGCGACGCGAACGCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.389790211
Functional Information
Coding potential Y
Potential coding position 27592274-27591462(+)
27592393-27591419(-)
27592481-27591419(-)
Potential amino acid sequence MENITMATPSPTVAGMEKHISIAPTASVMPKLDHRMTPTMARGHARTAFCHANASTMLSATAPS
TGGSHSRSRLRSRCAFRERGCCTMSLTALNTKNPTANVAAARWTRNTHSVMPLVYTRELSDANA
TMRYPTKKASSETVAV*(+)
MVGVILWSSFGITLAVGAMLMCFSMPATVGLGVAMVMFSIGTGLYACWVTRRVGFTARVFERAV
QPVDKFRGLNGPAYLMVAAGFVWISVWCVAVIGAANYRFPGLTILGLVLSLMWTAEVMRNVANL
TASRVIALYYLRGMQSSVQFSFQRALSYNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMF
SCAHCCLHVMNAIFEFGNSWAFVHIAAYGRGFVQASRSTWEQFERLQGMPALVDSDITSSVCFL
TGVTSGALCVALAGSWTFATHKHYTATVSLLAFFVGYLMVAFASLNSRVYTNGITLCVFLVHLA
AATFAVGFFVFRAVKDIVQHPRSRNAQRERSLLREWLPPVEGAVALSIVLAFAWQKAVRAWPRA
MVGVILWSSFGITLAVGAMLMCFSMPATVGLGVAMVMFSIGTGLYACWVTRRVGFTARVFERAV
QPVDKFRGLNGPAYLMVAAGFVWISVWCVAVIGAANYRFPGLTILGLVLSLMWTAEVMRNVANL
TASRVIALYYLRGMQSSVQFSFQRALSYNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMF
SCAHCCLHVMNAIFEFGNSWAFVHIAAYGRGFVQASRSTWEQFERLQGMPALVDSDITSSVCFL
TGVTSGALCVALAGSWTFATHKHYTATVSLLAFFVGYLMVAFASLNSRVYTNGITLCVFLVHLA
AATFAVGFFVFRAVKDIVQHPRSRNAQRERSLLREWLPPVEGAVALSIVLAFAWQKAVRAWPRA
MVGVILWSSFGITLAVGAMLMCFSMPATVGLGVAMVMFSIGTGLYACWVTRRVGFTARVFERAV
QPVDKFRGLNGPAYLMVAAGFVWISVWCVAVIGAANYRFPGLTILGLVLSLMWTAEVMRNVANL
TASRVIALYYLRGMQSSVQFSFQRALSYNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMF
SCAHCCLHVMNAIFEFGNSWAFVHIAAYGRGFVQASRSTWEQFERLQGMPALVDSDITSSVCFL
TGVTSGALCVALAGSWTFATHKHYTATVSLLAFFVGYLMVAFASLNSRVYTNGITLCVFLVHLA
AATFAVGFFVFRAVKDIVQHPRSRNAQRERSLLREWLPPVEGAVALSIVLAFAWQKAVRAWPRA
MVGVILWSSFGITLAVGAMLMCFSMPATVGLGVAMVMFSIGTGLYACWVTRRVGFTARVFERAV
QPVDKFRGLNGPAYLMVAAGFVWISVWCVAVIGAANYRFPGLTILGLVLSLMWTAEVMRNVANL
TASRVIALYYLRGMQSSVQFSFQRALSYNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMF
SCAHCCLHVMNAIFEFGNSWAFVHIAAYGRGFVQASRSTWEQFERLQGMPALVDSDITSSVCFL
TGVTSGALCVALAGSWTFATHKHYTATVSLLAFFVGYLM(-)
MAASGGGRGGAQHRAGVRVAEGGAGVAARHGGRHPVVQLRHHAGGGRDADVLLHAGHRRARRRH
GDVLHRDGAVRVLGDAPRRVHGAGVRARRAAGGQVPGAERAGLPDGGGRVRVDLRVVRRGDRRG
ELPVPGADHPRPGAQLDVDGGGDAERGEPDGEPGDRALLPPRHAVQRAVQLPARALLQPRQRLP
RLAVRPHHRGAPHRRPRPQPPRGRGRVHVLLRALLPPRHERHLRVRQQLGLRPHRGVREGVCAG
VEEHVGAVREATGDAGAGGLGHHELGVLPHRGHQRRALRRARGVVDVRHAQALHRHRLAARLLR
RIPHGGVRVAQFARVHQWHHAVRVPGPPRRGHVRRRVLRVQGRQGHRAAPAFPERAARAKPAAG
MAASGGGRGGAQHRAGVRVAEGGAGVAARHGGRHPVVQLRHHAGGGRDADVLLHAGHRRARRRH
GDVLHRDGAVRVLGDAPRRVHGAGVRARRAAGGQVPGAERAGLPDGGGRVRVDLRVVRRGDRRG
ELPVPGADHPRPGAQLDVDGGGDAERGEPDGEPGDRALLPPRHAVQRAVQLPARALLQPRQRLP
RLAVRPHHRGAPHRRPRPQPPRGRGRVHVLLRALLPPRHERHLRVRQQLGLRPHRGVREGVCAG
VEEHVGAVREATGDAGAGGLGHHELGVLPHRGHQRRALRRARGVVDVRHAQALHRHRLAARLLR
RIPHGGVRVAQFARVHQWHHAVRVPGPPRRGHVRRRVLRVQGRQGHRAAPAFPERAARAKPAAG
MAASGGGRGGAQHRAGVRVAEGGAGVAARHGGRHPVVQLRHHAGGGRDADVLLHAGHRRARRRH
GDVLHRDGAVRVLGDAPRRVHGAGVRARRAAGGQVPGAERAGLPDGGGRVRVDLRVVRRGDRRG
ELPVPGADHPRPGAQLDVDGGGDAERGEPDGEPGDRALLPPRHAVQRAVQLPARALLQPRQRLP
RLAVRPHHRGAPHRRPRPQPPRGRGRVHVLLRALLPPRHERHLRVRQQLGLRPHRGVREGVCAG
VEEHVGAVREATGDAGAGGLGHHELGVLPHRGHQRRALRRARGVVDVRHAQALHRHRLAARLLR
RIPHGGVRVAQFARVHQWHHAVRVPGPPRRGHVRRRVLRVQGRQGHRAAPAFPERAARAKPAAG
MAASGGGRGGAQHRAGVRVAEGGAGVAARHGGRHPVVQLRHHAGGGRDADVLLHAGHRRARRRH
GDVLHRDGAVRVLGDAPRRVHGAGVRARRAAGGQVPGAERAGLPDGGGRVRVDLRVVRRGDRRG
ELPVPGADHPRPGAQLDVDGGGDAERGEPDGEPGDRALLPPRHAVQRAVQLPARALLQPRQRLP
RLAVRPHHRGAPHRRPRPQPPRGRGRVHVLLRALLPPRHERHLRVRQQLGLRPHRGVREGVCAG
VEEHVGAVREATGDAGAGGLGHHELGVLPHRGHQRRALRRARGVVDVRHAQALHRHRLAARLLR
RIPH(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017