Detail information of Csa3G799630_circ_g.1


General Information
CircRNA Name Csa3G799630_circ_g.1
ID in PlantcircBase csa_circ_001998
Alias Chr3:30769783_30774561
Organism Cucumis sativus
Position chrChr3: 30769783-30774561  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G799630
Parent gene annotation NA
Parent gene strand -
Alternative splicing Chr3_circ_ig.113
Support reads NA
Tissues leaf,root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Csa3G799630.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTTCATGCGTGTAGGCATAACAGCTCACATTCAGTTTCTTTGATTCCACCAAATGTAAGGAC
TTTGAATCAGAACTATAAGCAAACAAGTCCAGCCCActaatgtaatctgaggtatgttttattc
caggagttaaatctgacaggaatctcaaaactgctgacaaaagttgtggatcgttggttgcaaa
agcagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAATGTAATCTGAGGTATGTTTTATTCCAGGAGTTAAATCTGACAGGAATCTCAAAACTGCTG
ACAAAAGTTGTGGATCGTTGGTTGCAAAAGCAGCTTGAAGAAACAAGGCCGGCCGGACTGTGTC
AACCTACATCATGTTTTTGGAAAGTCATTCTCAGTTTTGTGAATCAGAAAGGTTACTATTAAAT
GAAACACAACAGAGATTCAGAGACGTTCAAAATATATGAATCAAATCGACAACACAGCAAGAAA
ATTTTTCCAAATTCAATATATTTGGGAAAGGTGAGGAGCAATAATTAAAATATTATCCACTGAT
ATTCTTCTTAATCATGAAAGGTTAAAATATCATTTCAATTAATACTTGAACTTTTTCACTTTCA
AAATAAGTTGTATATCTTCTTTTAACCCCAAAAAAAATTCGTTCAAGAAGTGAAGCCCTTGACA
TGGATATTCATACGAGATATCAAAAAAATTACCTTAAACTTCCTTGTGTAGCGCAATGCTTCGA
GGTAATATCCATCTTGCACGAGCAGCGACACATAATCATGATGTAGAGAAAGCTGCCGGAGCAT
ATCCAGTCCCAGTTTCCTTGTGGGGAAATTATGGCGACCAGACTCCAATAATTGCAAGGCAACC
TCTTTTGAAGGTTCTAGAATCTGTCAGAAGAGAAAAGACGTGCATTCATTTGTGTCACTCTCAC
ACTTCTGAGAAGACCTTGTAAGAAAAGATTAATACCTTTTGGTGCACGAATAATCCAATTTCTG
TGTATCGTTCATTGCGAGCTAATATTTGGACTGTCAAGACATAGATGTTTGGGTTTACTTTGAT
CTTTTCCATATTAACCCTACAAAAAAAAACGGAAAAGGAGGGAAATACCAAATGAACATACAGA
AAAATGTACAAACTACGCTTATGGTTATGGTTGATGCCAGGCCATTAAACCAATATGCAACTTC
GAAAACTTAAATCAACAGCCATTTATTATAAAATTGTACGGCAGTAGATTAAATTTCTTGAAAC
CCTATACTTGGAACTTATCCATAGTTTTTATTTCTCTATCACATCAAGTATCAACAAGAAGTAA
ATCACATAATGATCAAGCCGCTAGCATTGTATAAAAGAGAGTATAGAATGATGATTGTGAAATC
ATAACCATTTCACGTTGAACACATGGGTAAAGAATTGGCATGCTGCAATCAGAACAAGACCCTG
TTTGGCTGTTTCTACTAGAGAATTCAAAACACTTTGAAATTGAAAGAATATCGAATACCTGCGG
AGGAACTCGATAATTATAGCCAGCAAGTAAGAAGGGTCTCCAACTATCTCTTCCTCGATGGGAG
CAAACACAAAGCTGTACATCTCATCTGGTGAGATAGATGGTGACGAAATCATAGATCCCTCATC
AGAGACATCGTCATTCAACCGAATACATCCGGGGCCAAGATGTTGATACTGTGAAGATGATGCC
TGAGCTTCAACTATAGACTGATGGTTGCCTGGAACTGTATTTAGTTGTTTAATGTCAGCATTCT
CCTCAGAATCTGAAGATGGAAATATTGAAGTTCTGTGAAGGGCTTCACTTTCCACTCCAGCAGC
TGAATCACGGTTATTAGAACCAGGTACAGGGCCAGAGCCACTATCTTGAGGCACAACCGACTGC
GATCTGTCGGTTTTTGATTCCTTGTTATTAGGACCTACTTTGGTCGTGCGAATATATGATGAGA
TTAGAACTTCTATAGCCTTAGCAACACTAGCCACTGGCCTGTGCTCCAGAATTGTAGTTCTCGT
CAAGGTCAAGCACAACTGTTTAGCCTGAACATCAGCAGGAATTATTTAATATCAAGGAAAGAAA
TACTTTTGACATTCGCCCAAAAAATAACTTGGGAACCACAACATAATTATAGCCAATACACCTA
CGAAACCTATGTTAAAGGCAAAAACAGTAAAGGGAAGGCAGTATCAGCTCAGGGGATGGGTGGT
TAAAATGGTTTGTGTTAGTCTTGTCCCTAAGTGGTAGTTGGTTAGTTATGAATATAAGTATTTA
ATAACCAAAAAAGAAGCACAGACACTGACACTACATGAATTCTTGTATTTGAAGCACAAATCCT
CGTACCAATCAGTGAAACTAAAGCTCTACCTTGCTAACTTCTAATTTACGTCGCTGCAAGAATT
CTAGAAGTGATGGCACTTCAGAGCTACTTGAAGCAATTGCCTGCCATTAAAAAAGAACTTAAGA
TCCTAAAATTTTGCATGATAAGAAAGAAAAAAATATTAATATCAAATTACAACAATAATAACCT
CCAAGTCTATATGTATCTTCCATACTAATTTGTTGACATGATCACAAATCAGGTCTGGGACAAG
AAACTTCCAACCATCCCCGTAAACAATTGCTTCATCAGGTACTGCATCATCTTCTAAAGTAGCA
TTATCTTGCTTACTACTTCGGACATCAATATTGGGTCCAGGAAAACCTCTCGACAACAAAGGAA
GTGGAGCAGATATGGGTGCCCTTGAATCAGTAAAAATATCATAAAGAATAACTACTTTTGCATC
GACTTGATGAACAAGCAACACGTTGTCAACCACGCTCACAGCAATCGAGCTCGAGTAGATTGGC
AAAGAACCCTGCAGAAAACAATGACTGCAAAGTAAGCATAACATCCCTCTAGTCTATATTTGAT
GTCAAAGAGTTAACTTAGAAATCTAGAACAGATACAAAGCCTGATTAATGTATGCAGCACCCTC
AGCAAAGTTTGATCCCCTATGAACCATAACACGAAGAGAAATAGAATTTAATTGAAACCTGACT
AACGATATAATCGGACTTTTGACAGACAACTGCATGGTAAAGCTTATTGATGGAGCAATCCATG
CATAACCCATTCAACAAGGGTGTATTAACTTTTCTCCGGTTAGGAATGAAATAAAAATATGAAT
GAGATTTTGGTTTTAAATCCTGCTGTTTATTCTTACTCACTTCTTAACAATTTCATTCTACATT
AATTGCAAATGTAGAACAATAAATATTAGAAAACTTCATTGACAATATGATAAAACATGAAATA
CAATTTAAGCAACCAAAGAAATAATTATCCAGATAGAAAAGTACAAGATTAGGCGCTTGTTTCA
TAGCTATCTTTAGCATAGAAATTACGTTCTATACCAGACAAAAGCCATTTCATTTATGAACTTT
TTTCACTACAAGATCCCACAAGGAGTTACTTGGGAATAACATCCCAAAGAAGGGTAGAGTATGA
GAACAGACGTGAATACCACCTACTGAGACCACCTCCTAAATTTTGAGGAACCACAGTAACTCCA
CCACATAACCTATCACCATTGGCCCATTACAATGACACTTGTAATGATCTTGTCAAATTAAAAT
TTGCAAAAAGAAATCTCCATGCTAATGTATAAACGTTCTTTTCTTATTTGGAATAAACTCGAGT
GAGAGAAGTAGGAACCAACAATTTAGCCCATTTTAAATCTCAACATATTCAAAAGAAACACACA
AAAAACAAACAGACCCTATCTACATGGATAATTTTTTCGAAACATATACCTGCTGCACAACTGC
ATCACGATAGAACCTGTAAGTATGAAGTAGCATTGCAAGTCTATCCACTTGCAAGCAATATATT
CTTCCATAGCTGACAGAGGTTAAGAAAATATACATATATGAGCTTTCTTTTGATTAGAAACAAT
AACAAATTGCTCAAAGGATGTAGAAAAAGAAAATGGGCAAACTGACAGAAAACCCTACACAGTG
ATAATAAAGACGTCCTCTATAGCTAGGACAGGCTTGCTGTTAGCATCAGATTTTGCCATCGTCA
TTTCAAACTTTGGCAAGCGAACAATCCCTGCTGCTGAAAGCTAAACATGAAAAAAAAATAGCTT
CCAAATGAGACAGCTAATATATAATCATGGGATAATTGGAAATCTAACATAATTTAGATCATAT
AAGAACAAAACAGTTAATTTGGTTAGGTTGTTTTGAGGCAGCCAGTTGCATCTTCTTGAAAGTT
TTTAGTTTAAATTTAGTTCTTTATGAGAGGAATTTCTTCGAATATGGTTTTGTTTATCTTGATC
TCATCTATTTGGAATTTGTTTTGTAGCTTTTGTTGTAGAGGTAGAGCGAATTTTCTCTTTTCTC
TTGCTCTTAGTAAAATACTCTTGTACTTTGCTCTTTTATAAATAATTGTCTCCGTTTAAAAAGA
ACAAAAACATGCATATATAAATTGTTACATTTAATTTAATCAATATGTAAGTTAATAAGTGAAA
AGCGATTACATTAATTATAAACTAGGACACTCTTTATTGATTGAAATTCATCTATGCCATAATA
AATTAGTGACAGTAATCGATTAAATTTTACCATTTTCTTCGTGAAATTGGAGGAAAATGCTTCA
GAAAAATATATTTATACTAAAATTGTGGGCATACTGATAACAATAGTATGTAGTGCTATTTATC
ATAATGTCCCAGAAGTAGAAACCGTATTTTAACGGTTTTTGCCAAGCAATGTTGCCAGGAACGC
AGAAAAATTAAAGTAAACTGTATATAAATAAATTGCGGAAGTTCAAATAAACTCAGCACGTCAT
GGTAGTAAAACTTGTACCTGAAATCCATGAAAAGTTTTGCACTGCAGTCCAGAAGCCATAAGCA
CCAATCGACTTTCATGCGTGTAGGCATAACAGCTCACATTCAGTTTCTTTGATTCCACCAAATG
TAAGGACTTTGAATCAGAACTATAAGCAAACAAGTCCAGCCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.092338237
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019