Detail information of Zm00001d052444_circ_g.2


General Information
CircRNA Name Zm00001d052444_circ_g.2
ID in PlantcircBase zma_circ_008189
Alias zma_circ_0001625
Organism Zea mays
Position chr4: 190135239-190135627  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d052444
Parent gene annotation Hydroxymethylglutaryl-CoA lyase mitochondrial
Parent gene strand +
Alternative splicing Zm00001d052444_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d052444_T003:2
Zm00001d052444_T001:2
Zm00001d052444_T002:2
Zm00001d052444_T004:2
Zm00001d052444_T005:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAACCGATCCGGCGAAGGTGGCGTACGTAGCTAAGGAGCTGTATACCATGGGCTGCTCGGAGA
TCTCGCTCGGCGACACGACTGGTGTCGGGACACCAGgggttcgaggctgccatcgcagccggcg
cgaaggaaatcgcggtcttcgcgtccgcgtctgaatccttctccaggtccaacatcaactgcac
catcgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTCGAGGCTGCCATCGCAGCCGGCGCGAAGGAAATCGCGGTCTTCGCGTCCGCGTCTGAAT
CCTTCTCCAGGTCCAACATCAACTGCACCATCGAGGAGAGCCTTGCTCGGTACCGCGGCGTCAC
AGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGGTAAGTGAGTCGATCGATTTTTCTTTCT
TTCTTTCCCGCCTCTTCAAGTCCGTGTGATGTGGTCTGAATTCCTCTGTTGGTCTCTCAGGTAC
GTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGCGAAGGTGGCGTACGTAG
CTAAGGAGCTGTATACCATGGGCTGCTCGGAGATCTCGCTCGGCGACACGACTGGTGTCGGGAC
ACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.076693702
Functional Information
Coding potential Y
Potential coding position 190135577-190135297(+)
190135579-190135500(-)
Potential amino acid sequence MGCSEISLGDTTGVGTPGVRGCHRSRREGNRGLRVRV*(+)
MVYSSLATYATFAGSVAPPTGQAITHDTYPRMLSPCFLAAAVTPRYRARLSSMVQLMLDLEKDS
DADAKTAISFAPAAMAASNPWCPDTSRVAERDLRAAHGIQLLSYVRHLRRIGCASNGASNHT*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b