Detail information of Os03g0108600_circ_g.3


General Information
CircRNA Name Os03g0108600_circ_g.3
ID in PlantcircBase osa_circ_017495
Alias NA
Organism Oryza sativa
Position chr3: 506574-507061  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os03g0108600
Parent gene annotation Similar to DEAD-box ATP-dependent RNA helicase 50. (Os03t0108600
-01)
Parent gene strand +
Alternative splicing NA
Support reads 33
Tissues shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0108600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGTTTTTCAGTCGAAGATCTTTTAAGGAAATTGGCTGTAGTGATGAAATTCTAGGTGCACTG
AGAAGTTTTGGCTTCCCTCGTCCATCGCATATTCAGaaaatgggagaagtacaagtattggaaa
ttttggcagactcaaggcacagaaagttaaagttttagcaaggagatcagctcaccttaagaga
gaggattc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 488
Transcript exons: 506574-507061
AAAATGGGAGAAGTACAAGTATTGGAAATTTTGGCAGACTCAAGGCACAGAAAGTTAAAGTTTT
AGCAAGGAGATCAGCTCACCTTAAGAGAGAGGATTCTGGTCGCATAAGCACCAGCCGGTTCAGT
GAATCTCCTTCTGATGAGTCTGACGAAGATGGCACTTATTTTGAAAGAGATAGGGCAAGAAACA
CAAGGCAAAACAGTAGATCTAGAGACGACAAAACCCGTGGTGCGCATTCTCTGAATTCTGTCTT
GAGGCAGTATAGAGGTGCTGATGACTTGGATTTTCCAGGATCAGAGGCTACTTCTGGCTCCAAA
AGATGGGGTAACATTTCTGATGTTACATTTGGACGACAGAATCAAAGGCAAAAGGGCCCTTTAG
ATAGTGGGTTTTTCAGTCGAAGATCTTTTAAGGAAATTGGCTGTAGTGATGAAATTCTAGGTGC
ACTGAGAAGTTTTGGCTTCCCTCGTCCATCGCATATTCAG

Genomic sequence AAAATGGGAGAAGTACAAGTATTGGAAATTTTGGCAGACTCAAGGCACAGAAAGTTAAAGTTTT
AGCAAGGAGATCAGCTCACCTTAAGAGAGAGGATTCTGGTCGCATAAGCACCAGCCGGTTCAGT
GAATCTCCTTCTGATGAGTCTGACGAAGATGGCACTTATTTTGAAAGAGATAGGGCAAGAAACA
CAAGGCAAAACAGTAGATCTAGAGACGACAAAACCCGTGGTGCGCATTCTCTGAATTCTGTCTT
GAGGCAGTATAGAGGTGCTGATGACTTGGATTTTCCAGGATCAGAGGCTACTTCTGGCTCCAAA
AGATGGGGTAACATTTCTGATGTTACATTTGGACGACAGAATCAAAGGCAAAAGGGCCCTTTAG
ATAGTGGGTTTTTCAGTCGAAGATCTTTTAAGGAAATTGGCTGTAGTGATGAAATTCTAGGTGC
ACTGAGAAGTTTTGGCTTCCCTCGTCCATCGCATATTCAG
Conservation Information
Conserved circRNAs osi_circ_004480* osi_circ_014101
PMCS 0.267251844
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017