Plant Circular RNA Database

Detail information of Os06g0622000_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0622000_circ_g.2
					
						ID in PlantcircBase
						osa_circ_031401
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 24987484-24993696  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0622000						
					
						Parent gene annotation
						
							Zinc finger, CW-type domain containing protein. (Os06t0622000-01
)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0622000_circ_g.1 Os06g0622000_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0622000-01:12

General Information
CircRNA Name	Os06g0622000_circ_g.2
ID in PlantcircBase	osa_circ_031401
Alias	NA
Organism	Oryza sativa
Position	chr6: 24987484-24993696 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0622000
Parent gene annotation	Zinc finger, CW-type domain containing protein. (Os06t0622000-01 )
Parent gene strand	-
Alternative splicing	Os06g0622000_circ_g.1 Os06g0622000_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0622000-01:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTAGGATTTGGGCCACTATCACAAATCTCCTCTCTCAAATATGACTTTGGATTCATCGAGCCAG
ATTGGAAATCACTTCTGTATGACCTTTTTAAAGCATctggcaattttcgttcttcatgactgct
tacaacttctagcagggcccctacgtatcctcttcaaaacagggcgaggggtaccaggctgagt
ttgtgagg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1966
Transcript exons: 24987484-24987601,24987682-24987775,24987858-24988065,24
988379-24988491,24989331-24989468,24989568-24989651,2499
0169-24990327,24990406-24990489,24991157-24991492,249915
93-24991694,24992622-24992805,24993351-24993696
CTGGCAATTTTCGTTCTTCATGACTGCTTACAACTTCTAGCAGGGCCCCTACGTATCCTCTTCA
AAACAGGGCGAGGGGTACCAGGCTGAGTTTGTGAGGAGTCGCCTTCAGCATCATCATGCTTATC
TTCGCTGTTGTTTTTGTCCATCGACCGGGTCCCATTGGATGATTTCCTTTTCTTGTTGACAACC
GTTGAGATTAGTTTGACGTCCTTCACATCTTCATCTTGAGTAAATTTTTGAGACTGGCTGTCAT
CGGACCTAGTTTCTCTTGCATTTACCTTAGCCACCTCTTCCTGCTGGGTAATCCTATCACGCTT
ATCATGTTCAGATCGTTTCTCACCTATCACAATGACACCACGTGCCATTTGTTGCTCTGCAACC
TCACATTTCCCATTGAATGGTGGCATGTAGCAAAACCATTCATCTGGCAGAGACTTTGTATCGA
AGCCTGCATTCAATATTCTCCATTTACGACAGCTGTAGCACTGAACCCACTCATGATCAGCCTT
ATAGCGCTCACTCCCTTTTCTCAATTCGAGAGTGTCAAAATTTGTATCCCAGTATTCATCCGCT
TTCCTACCAAGCCACTCCTCCAGTTTAGCATACATTTCACAATCTTGGAACCCTTGTTTACTGT
TAAGAACCCATGAATTACCATCTTCATCATCAATAAGGTCTGTGATATCTGCAACTCCAATTAC
TCCACGTCCCATGTCAGCATTATGCTTTTGACCTCCAACTCGTTTGTAAGACTCTATTAGACGG
CCATGCCAATACAAGAAAATTCCACAGTTCATTCTGTCCCATTCTACATTGCTCCTTCCAAGGG
TCAATTGAATAGTCCTACCCATTATTTCACCAGATATAACAGATGTCTTGTTAAGGGTCTTTGC
TAAAGGGCGAGTTTTGACCGAAGACCCTTGGACAGAGATCTTCATCCGAGGATTCAGGAACATA
ACTTCCAAATAGGACTGAAGAGAATAGTCCAATGGTACATTGTTACTTGTTTGTCCTGGGCGCA
ATCTGACTCTTCTTGAACGGATTAGTATGTCTCCACGACCATGGTGGACAGGATCTTCAGATGG
CTTCCCTGAACTCCAGTCCAAGGTGTAATCTGCACCCCATCTATCTAAATTCCATATATAAATC
TGTGTTCCAGTACCGTCTTCACCAAATATCCCTAGCTTTTCTCCAATGAAATACTCATTGAAGG
GAGAAAATTCCTTAATAGCATTCAGGTTATATTCAGCAGTAGCTTCAGATTGGACACTTGAATC
AACTTCCATGTATTGCCCTTCTTTACGATATGTCACCACAGGTATCTCAAGATTATCTTTATTT
TCATTAAAAGACTGAGATAGGAAGGCCACTGATCTGGAAGATGAAGTTTGGGTTAGCACAATTG
CATCTCTGCCAAGTTTCATAGCACCAGTCTTAAATCCAATTCCAAACCTCCCAATTTGATCCTG
GCGTTGCTTATCCGGTCTTTTGTGACCGAATGAGATCATTCTCATCATTTCAGCACAAGTCATT
CCATGCCCATCATCAATTACAGACAAGACAGGGATTTTTTTGTCTGCTTTCTTCGAAAACAATG
ATTTGACTGAAATATTCAACCTTGATGCATCTGCATCTCTAGAGTTGTCAATGAGCTCTGCTAT
TGCTCCAAAGACCCAGCCAGCATGTGTCTGACTGAGTGTTCGCAGATAACTAGGATCCGTGCTG
ACAAAATTTTTTGCAAGAGTGGTGGTTCTCTTTTTCACTATTGGATCTAAAATTCTAGGGCCAT
CTTCAACAGACTCACATGGTGATGATTCTGGAACTGATTTGTGCAGCTCTGTGACACGCGAGGC
ATTCATCTCCTTAGGATTTGGGCCACTATCACAAATCTCCTCTCTCAAATATGACTTTGGATTC
ATCGAGCCAGATTGGAAATCACTTCTGTATGACCTTTTTAAAGCAT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TTAGGATTTGGGCCACTATCACAAATCTCCTCTCTCAAATATGACTTTGGATTCATCGAGCCAG ATTGGAAATCACTTCTGTATGACCTTTTTAAAGCATctggcaattttcgttcttcatgactgct tacaacttctagcagggcccctacgtatcctcttcaaaacagggcgaggggtaccaggctgagt ttgtgagg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1966 Transcript exons: 24987484-24987601,24987682-24987775,24987858-24988065,24 988379-24988491,24989331-24989468,24989568-24989651,2499 0169-24990327,24990406-24990489,24991157-24991492,249915 93-24991694,24992622-24992805,24993351-24993696 CTGGCAATTTTCGTTCTTCATGACTGCTTACAACTTCTAGCAGGGCCCCTACGTATCCTCTTCA AAACAGGGCGAGGGGTACCAGGCTGAGTTTGTGAGGAGTCGCCTTCAGCATCATCATGCTTATC TTCGCTGTTGTTTTTGTCCATCGACCGGGTCCCATTGGATGATTTCCTTTTCTTGTTGACAACC GTTGAGATTAGTTTGACGTCCTTCACATCTTCATCTTGAGTAAATTTTTGAGACTGGCTGTCAT CGGACCTAGTTTCTCTTGCATTTACCTTAGCCACCTCTTCCTGCTGGGTAATCCTATCACGCTT ATCATGTTCAGATCGTTTCTCACCTATCACAATGACACCACGTGCCATTTGTTGCTCTGCAACC TCACATTTCCCATTGAATGGTGGCATGTAGCAAAACCATTCATCTGGCAGAGACTTTGTATCGA AGCCTGCATTCAATATTCTCCATTTACGACAGCTGTAGCACTGAACCCACTCATGATCAGCCTT ATAGCGCTCACTCCCTTTTCTCAATTCGAGAGTGTCAAAATTTGTATCCCAGTATTCATCCGCT TTCCTACCAAGCCACTCCTCCAGTTTAGCATACATTTCACAATCTTGGAACCCTTGTTTACTGT TAAGAACCCATGAATTACCATCTTCATCATCAATAAGGTCTGTGATATCTGCAACTCCAATTAC TCCACGTCCCATGTCAGCATTATGCTTTTGACCTCCAACTCGTTTGTAAGACTCTATTAGACGG CCATGCCAATACAAGAAAATTCCACAGTTCATTCTGTCCCATTCTACATTGCTCCTTCCAAGGG TCAATTGAATAGTCCTACCCATTATTTCACCAGATATAACAGATGTCTTGTTAAGGGTCTTTGC TAAAGGGCGAGTTTTGACCGAAGACCCTTGGACAGAGATCTTCATCCGAGGATTCAGGAACATA ACTTCCAAATAGGACTGAAGAGAATAGTCCAATGGTACATTGTTACTTGTTTGTCCTGGGCGCA ATCTGACTCTTCTTGAACGGATTAGTATGTCTCCACGACCATGGTGGACAGGATCTTCAGATGG CTTCCCTGAACTCCAGTCCAAGGTGTAATCTGCACCCCATCTATCTAAATTCCATATATAAATC TGTGTTCCAGTACCGTCTTCACCAAATATCCCTAGCTTTTCTCCAATGAAATACTCATTGAAGG GAGAAAATTCCTTAATAGCATTCAGGTTATATTCAGCAGTAGCTTCAGATTGGACACTTGAATC AACTTCCATGTATTGCCCTTCTTTACGATATGTCACCACAGGTATCTCAAGATTATCTTTATTT TCATTAAAAGACTGAGATAGGAAGGCCACTGATCTGGAAGATGAAGTTTGGGTTAGCACAATTG CATCTCTGCCAAGTTTCATAGCACCAGTCTTAAATCCAATTCCAAACCTCCCAATTTGATCCTG GCGTTGCTTATCCGGTCTTTTGTGACCGAATGAGATCATTCTCATCATTTCAGCACAAGTCATT CCATGCCCATCATCAATTACAGACAAGACAGGGATTTTTTTGTCTGCTTTCTTCGAAAACAATG ATTTGACTGAAATATTCAACCTTGATGCATCTGCATCTCTAGAGTTGTCAATGAGCTCTGCTAT TGCTCCAAAGACCCAGCCAGCATGTGTCTGACTGAGTGTTCGCAGATAACTAGGATCCGTGCTG ACAAAATTTTTTGCAAGAGTGGTGGTTCTCTTTTTCACTATTGGATCTAAAATTCTAGGGCCAT CTTCAACAGACTCACATGGTGATGATTCTGGAACTGATTTGTGCAGCTCTGTGACACGCGAGGC ATTCATCTCCTTAGGATTTGGGCCACTATCACAAATCTCCTCTCTCAAATATGACTTTGGATTC ATCGAGCCAGATTGGAAATCACTTCTGTATGACCTTTTTAAAGCAT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.314893169

Conservation Information
Conserved circRNAs	NA
PMCS	0.314893169

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24993638-24987570(+)
						
						Potential amino acid sequence
						
							MTLDSSSQIGNHFCMTFLKHLAIFVLHDCLQLLAGPLRILFKTGRGVPG*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24993638-24987570(+)
Potential amino acid sequence	MTLDSSSQIGNHFCMTFLKHLAIFVLHDCLQLLAGPLRILFKTGRGVPG*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0622000_circ_g.2

Address

Any questions?

Supported by