Detail information of AT2G43160_circ_g.13


General Information
CircRNA Name AT2G43160_circ_g.13
ID in PlantcircBase ath_circ_018107
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17952420-17952645  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G43160
Parent gene annotation Clathrin interactor EPSIN 2
Parent gene strand +
Alternative splicing AT2G43160_circ_g.1 AT2G43160_circ_g.2 AT2G43160_circ_g.3 AT2G43160_circ_g.4 AT2G43160_circ_g.5 AT2G43160_circ_g.6 AT2G43160_circ_g.7 AT2G43160_circ_g.8 AT2G43160_circ_g.9 AT2G43160_circ_g.10 AT2G43160_circ_g.11 AT2G43160_circ_g.12
Support reads 1
Tissues aerial
Exon boundary   No-No
Splicing signals   CA-TG
Number of exons covered AT2G43160.2:1
AT2G43160.3:1
AT2G43160.5:1
AT2G43160.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGTCATCATCATCTCATCCAGATCTCACACCTTTAACAGGAGCAATTGAGATTGTTCCTCCGC
CTCAGAAAAAGTTTGAGCCAAAATCATCAGTCTGGGgcacaccaaggtcatggaatgccgccat
cccatggtccacaacgaactcaatccggacctgttactctgcaagggaacaacaatgtcatggg
agacatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCACACCAAGGTCATGGAATGCCGCCATCCCATGGTCCACAACGAACTCAATCCGGACCTGTTA
CTCTGCAAGGGAACAACAATGTCATGGGAGACATGTTCTCGCAAGCTACGCCCAACTCCTTGAC
GTCATCATCATCTCATCCAGATCTCACACCTTTAACAGGAGCAATTGAGATTGTTCCTCCGCCT
CAGAAAAAGTTTGAGCCAAAATCATCAGTCTGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.198377544
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017