Detail information of Os12g0429200_circ_g.18


General Information
CircRNA Name Os12g0429200_circ_g.18
ID in PlantcircBase osa_circ_011355
Alias NA
Organism Oryza sativa
Position chr12: 13776133-13780193  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0429200
Parent gene annotation Similar to Relative to SR12 protein (Fragment). (Os12t0429200-01
)
Parent gene strand -
Alternative splicing Os12g0429200_circ_g.2 Os12g0429200_circ_g.3 Os12g0429200_circ_g.4 Os12g0429200_circ_g.5 Os12g0429200_circ_g.6 Os12g0429200_circ_g.7 Os12g0429200_circ_g.8 Os12g0429200_circ_g.9 Os12g0429200_circ_g.10 Os12g0429200_circ_g.11 Os12g0429200_circ_g.12 Os12g0429200_circ_g.13 Os12g0429200_circ_g.14 Os12g0429200_circ_g.15 Os12g0429200_circ_g.16 Os12g0429200_circ_g.17 Os12g0429200_circ_g.19 Os12g0429200_circ_g.20 Os12g0429200_circ_g.21 Os12g0429200_circ_g.22 Os12g0429200_circ_g.23 Os12g0429200_circ_g.24 Os12g0429200_circ_g.25 Os12g0429200_circ_g.26 Os12g0429200_circ_g.27 Os12g0429200_circ_g.28 Os12g0429200_circ_g.29 Os12g0429200_circ_g.30
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0429200-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTAATATGATCTATAGAAGGACATGTGTTTACCTTGAATGGTTCATTGTCAGTTCGGAATTCT
ATGCCAGGGATGTCACGTAACCAAACTGGGAAACCActcttgcattgatcctaactttatatat
tgaggtgagccatccactgcaataagagctggctcacaaagtttgatagcagtgtgtagatctt
tcagatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTGCATTGATCCTAACTTTATATATTGAGGTGAGCCATCCACTGCAATAAGAGCTGGCTCA
CAAAGTTTGATAGCAGTGTGTAGATCTTTCAGATGCCCCCACTTAGGCTGCCTTAATATACCTG
AAAATAGCAATTCATGGATCTTAGGTAGCATCTCTTTATATAAAACAAAGAAACACCAATATAA
CTTAAATAGAATAAGATAAGGTCCTAAAACATCTAACATTTATTTAGAACTTTTACATACCATA
CTCATCGATTGGAGCATCATAATCGTAGCTTGTTATCTGAAGTGGACCACCAGCTGTCCGTGCA
AAATTTGTTCCACCAAAGTACTGCAGAATCAAATATGAACTATTAGATCTAGTTACTAAAAATC
ATAATTGCTCGGAAAACTATTCAAAAATCACTACAGTCAAGCCTAGGGAAAAATACTTCATGAT
GGAATAAAATATGCATCAATAGTTGAAGACTAAAAACTTACTTAAAGTAGGACAAAAATGCATA
CAAGAGTGCGGGCCAGGGCGGGCGAAAGGTGGTGAGTGGTTGTGTTATATACAAGTGCCCATAT
TTCTTCAAGTAACCCATCTTGAAAAATCTAGGCAAGATTTATATAGCTGTCTACCCAGATCAAT
AAAGGAACAGCAAGTAGCTAGTATCAATCGGGTTAGGTGTGGACTAATTGATTATGGCCTATGG
TATCAGCAACAGAACTAGTTATTTATTATGTTCGTTTAGATTCTCATAGACATTTACACCAGTT
CAACGAAAAAATGAAGATTCAAGGAGTGCACAAAACTGTACAGATTTTTTTGGCTCAATGCAGG
CACATGAAGTAAATGCTAGTGACACCATTCTTCTACAAGAAAATTAGTTGGATGCCCTCGAATT
TTGCTCAATCCTTTTCGTGCTGTGTTATGTTTCATCCCCTATATGTCCCTATGTTTTCCTTTAT
ATCTCCGACTGCCCATTCTGTTAGTTGATTGTAAGTTGACCGTGAAGTTTATTAAACTGGCCAT
ATTATCATGTAGCAAAATCAAAACCCTCGCCACGAATTCCCTTTCAGTTAAATGGAATATTTTT
AGGAAAAATTATGTAAATCAGAATACCAAATTTGGTTGAAATTAACCTGAAATTGAAAACAGTG
TTGATCCTCCAAATTATGGGTAGAATACCCTTTTTTTTTCTGTTACTAGTAACATGCACGTACG
TTGTAACGGGACAAGCCATATAATTAGGGATGGGCCAGGAGGATGATTGAGAATGAAACATTGG
ATCCCAGTGGTTACTTTCCACGCATGGATCGTGGTGGGGAAATGGGATGCAGGTGATGAGGAAA
AAACGAAGGGGCATAAAATAGTACGAGAGATTCAGGGGCACACAAAAAAAATATCTCAACAAGA
GACAGAATTGAACATATCCAGCACACCTGTTTGAACATCCATTTTTCAAATTATATATTGTACA
ATTATAAAAAATATAATGATATCAAAGTGTTTGGTAATGCAAATAATAAATAGCTATTTATGTC
ATAAGTCTAAGTACTTTCATGTATACTAGTCATCAAAGGTTCTAATGTTGATGGCACGTGTGCT
ATGATGAGTAAAAGATTGATGTATGAAAGCCAAATTGTAATACAGATTTTTAAAAGATTGGCGT
ACGAGGACCAACATTGTTTTCAATTCGAATACTTTTAATGTTAGCAAAAGAATTAACCGATGGG
ACATTTAAGGAAAAAAATTATGGATTTCAGTCTCTTCAACAAAAATCTTACCATGTAATAATTT
TGTAAGCTTCCACCTCTTTGGTAGAAACGAGCAACAGCAAAAGCACTGTCTTCAGCTGGCCTGT
GAGGTAATGCTCCACCCCAATCAGCATACCTGTCCACCCCAGTCAGCATACCATGTTATGCTCA
AAACAAGAAATTGTAGAGTCAGAGTGCACTTTGAGAATAGCAAATATATTATCAAGCAATACAG
TGAAATATATTATACTCAAAATAATAAACAGTGGAGTGACTTCGAGAACAATAATATATTGTCA
GGTAACACAGTAAAACAAAAACTGGATGAAACATAAACTAATGGTAATTGGTGCCTCACTAAAT
TAGACAAACTTGAAGTGTTTATCCACATACGAATATTGTTTCAGTGATACACTTATCATATAAT
CGACCACATGGTAGGTCTAGGGATGGAAAATAAAGAGCTTTTCAAAACTGTGTACAATGCAATG
TTAATCTACTTAAATCATCAATCATTAATATGTTATTCAAACAGTTTTAAAATACAACAACAAA
AAAAAAACATTTTTTATACAGCAGAACATTTTATGACAACCCGAAACTAATTCTCTCACAATCC
GGAATTTACATTTTGTAGGATCTTTTGGTAAGTGCTCCCTCCGTTCCAAAATGTAAGGATTGGC
CGGCCTTGCACACCAGGCCACCAGCATGCATCTCACAACCACAAGCATTCCGTCATCCCCCCCC
CCCCAAACCCCCACCCACCCACCAGCAGCATTGGAGTTAAAGGAGACAGTTTCGACGTTCCCAT
GTTTTAGCATCTCCCTAATTCCTGGTAAGTCTTCACAAGTTTGCTAACTAGTAAAGCTTTTATG
CATAGAAAGACTTGTACAGTTTAATACTCAAGTGAAACATGCTATCCAACTGATGACCTACTCG
ACTGAGTGGGTCAGGTCTAACACTGGTACTCATGGAAAATTGCTAGGTTCTAACAGTTTCAAAA
TGTTCATAGAAGTAGCAGTGGAATCCAGGAAAAAACCACGTACCATCCATCCCAATCTTCAGTC
CATATTGTTGGTTTATTGTAAGAATTTGGCTTGAAACCATCGCAATAAAATGCATTGCATGTAT
CGATCTGCCAAAAAGGATGAATTAGCTACTGACCTACTTCATGCAATTACCAAAACAATATAAT
ATTAACAAGAATCAAAAGATTATGAGGTCACCTACAATTTCTTCTGGAGCATCAGTCTGCCTGC
ACATCACCCAAGGAATGCCAGTGTCAAGCCCAATTGCCATCTGAGCGGCCCATTGCATATATCT
CTTCCCTGCTTGGCCATAATTTCCTTGAATATTCCCATACTCGTTTTCAATCTGTCAAACATTC
CCCACAGAAATGCCAGACAAAAAGACAAGTCATGTGGACATGTGCCCATTTTCATTTCAACTTT
TGGACATATATGGTATTACTAACAAAATGCATAAAAGATTATCAGCAGTCATATAAGCATGGCA
AATATATACTGTATCCTTCGGTTTTGGATGTGCAAGTCAGAAAAGTAACATATGAAACTCAAAA
AGAAAAAATAAAGAAAAGAAGTGCATATGGTATTGTGGTCCTGTTATTGACCAATTTGGTCATG
ATAACACATCTACACTGGATGCTAATTCCAGTTTTCTTGTATCAACTTGTCTAAAACCAATATT
GAGATTTCAAAAGACTACATTGTTTCCATTACCAATAAATACAATTTACTGCACCAATATTAGT
GATCACGAGTACTGCTGTCAGTTTGCCATCTGTATTCCAAACAAAATAATATTGATGACAGATC
TTCAAGGATTTGTATCACCTAGATTTAGCTATGCAATATAGTGCATATTCTTGTTGAAAAGTCA
AGAGTAACGAAGTTTTTTGTTTCCTTGGAAAAATGTTCAACTGACTGGAGAAATAGCATCAGAG
AATAGTATAAAGACCTGTTGTAATATAATGGGACCACCTTGCCAAGAATAAAGTTTCTCCTCTT
TCATTAAAGTGACAATTTTTGTCACGAAAGTCTGCATTTCAGCCTGTAAACATTTAGAAAAATT
AGTTGTTACAATGGTGTTTGCGCATGCCCCTTGAAAAAACATTTTGTAATTCTGCATTCTTTCC
TGTCAGACTTTGGTGTTCAAATTTGAAGAGTTTGAATAATATAAATTATCAGATGAAAGTAATA
TGATCTATAGAAGGACATGTGTTTACCTTGAATGGTTCATTGTCAGTTCGGAATTCTATGCCAG
GGATGTCACGTAACCAAACTGGGAAACCA
Conservation Information
Conserved circRNAs NA
PMCS 0.102428359
Functional Information
Coding potential Y
Potential coding position 13780133-13776160(+)
13779947-13780172(-)
Potential amino acid sequence MVHCQFGILCQGCHVTKLGNHSCIDPNFIY*(+)
MQTFVTKIVTLMKEEKLYSWQGGPIILQQIENEYGNIQGNYGQAGKRYMQWAAQMAIGLDTGIP
WVMCRQTDAPEEIIDTCNAFYCDGFKPNSYNKPTIWTEDWDGWYADWGGALPHRPAEDSAFAVA
RFYQRGGSLQNYYMYFGGTNFARTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHTAIKLC
EPALIAVDGSPQYIKLGSMQEWFPSLVT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017