Detail information of BGIOSGA001893_circ_g.13


General Information
CircRNA Name BGIOSGA001893_circ_g.13
ID in PlantcircBase osi_circ_008935
Alias Chr01:10009504_10014051(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10743207-10747753  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001893
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001893_circ_igg.1 BGIOSGA001893_circ_igg.2 BGIOSGA001893_circ_igg.3 BGIOSGA001893_circ_igg.4 BGIOSGA001893_circ_igg.5 BGIOSGA001893_circ_g.1 BGIOSGA001893_circ_g.2 BGIOSGA001893_circ_g.3 BGIOSGA001893_circ_g.4 BGIOSGA001893_circ_g.5 BGIOSGA001893_circ_g.6 BGIOSGA001893_circ_g.7 BGIOSGA001893_circ_g.8 BGIOSGA001893_circ_g.9 BGIOSGA001893_circ_g.10 BGIOSGA001893_circ_g.11 BGIOSGA001893_circ_g.12 BGIOSGA001893_circ_g.14 BGIOSGA001893_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA001893-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGACGCGTAATCAAAGATGAAGACCAAAGACACAAGAGAAAACAGCTAACAAGCTTATATCG
CCAATACCAGCCACAACTCAGCCTGGGTAGAGTTATcctggaaattcactttgaaccgtccaag
aagacggcagaactcgtggtaatttccatgatcagcaagacctgcagatgagcagatcacacat
cagaataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGAAATTCACTTTGAACCGTCCAAGAAGACGGCAGAACTCGTGGTAATTTCCATGATCAGC
AAGACCTGCAGATGAGCAGATCACACATCAGAATAAATTACGTAAAGATATGGAGCATTTATTT
TTGTTCCTGCATGGAGCTAATTTGACAGACAAGTACCTAAGTTTAAAGATTACTATTGCATTTA
TAATGAACCAATGTGTGCTTTTACTTATAAAAAGCAAGTCTGGTTTCTACAGTGCACCACATAG
CGTGACTAGGCATGAGTCAATCAACTCATGTTTTAAATGCTTCTTCACTTTACATAAAAGAGGC
TTTTCACTCCATGTAAGAGGATTGCAATTGAAACCGCTGGTCCAAGTAACTGAAATTTGTAACA
GGAGTACTACAATAGAACAGAACTTGGCAAAAAAAGGACAAAGCGTTATACCTTGGCCAGTTTG
GAGTATCTCCTTTGTGCCTGACATCAGATGAGAAAGAAACTGGGTCCTTGAAGGGTCCTCAACA
AAAATACTGCGCCTGACAGAAGCAAGTCTCACAAGACATTCCAAAGCCTGCAGAAATGAAGGGC
TAGGACACATAAAGAAGTGCATAGGAGAGGGAGGCGGGGAAGAGTCAAGGAAAGAGCAAATCCA
CTGAACATGGCACATTACTCATATAGAAAGAAAAACGAAACAGCTGTTTGTAAGATAAATTCAC
AAGGAAAATATTTCTTCTTAGAGATTCTTGAAAGGAATAAAGCATGCCTCTTAGAGATCCATAC
ATTAGGAGAATATTCCTGCTTCACAGAGGTGAGGAAGTCATGCTTTTAAAAGACAACATTGGAA
AAATATTGCTGCTGAATGGAAGTCAATCAAAATATTGCAGAACTGTAGTGATAGCTAACTAGCA
ATAAGTTTGTAAAATGTATTAATGAAAAATCATGTGATCAAAGTGTACATTCTAAACATGAGGA
ACTATGAAGCAAAATATACCTCTTTTGTGTTTATGGAGTAATGGACAAAGCACTCGGTAAAAAT
AATCAGAGATTATATCATCTATATTATTCAAATCACCCAATCAATGTATACCTCTTTTGAAACA
CATGTATCGTTGACTTTATAGTAATCGAAGAAGATCTGAACAGTAGAAGGATCTTGAAGGAGAG
GCCTCCAAGATGCAGGAAGCTGCATCAATAAAATTTACACAAATTATAAGAAATAGACCAACTG
GGATAGGTCAATGGTTTTACAGAGAAGATAACAATTGTGCAAACTAACATACCTGCACTGTACC
AAATTCCTCAGAGCTTTCATCCACAGGACAACCAACAAAGTCAAATGACAAGCACCTTAATGCA
AGCGAGAGGGGATCACGCCTAAAGTCATCAGGTACTGCAGTTTAATTACAGATTGTATCAGAAG
ATGGAAGTGAGAAAGTGTGGGCATTCCGATACACTCTACTTTTTACAAAATGTGGTCCTTGAAC
TTTACCTTCACTCTTCAGTTGGTGTAATGAGGTTAAAGAAATTTGGAAGATCTGTAGAAGAAAC
TGGTCCTTGAACGAACAAGCAATTTTTCTGTGAAGTGTCAAAGGCATAGCGTTTGCCTGCATGC
ATACACAGACACAAAAAGTCAGCTAAACACATTACAGTCCACCTGACAAAGGAAATTGAACAAG
AGTGGATAAAAATGGGCACAGCAGTATAAACTATATTGAAAAGATATAAGCAACAACATAAGTA
CATAACCCAATCAGAATTGAAGATATTAACAAACACTATATAATTCATAAGCAGAAGACAGCAT
GCAAAAAGTATGAAGCCAAGTACATACTGAGAAAGCTTAATGGTCCAAATCAACTATTCATTGA
AAGAATTGTTAACGGAAAAAAAGAGAAACAGTTCATAGAAGATATTTGTAGAACTAGAACCCTT
TCTTGTACTAAGCAAGCAATCTGTGTTATTTCATGTTAAATAAAATGAAACTCAACATTACAAG
AAATACAGTGACATGCAATCATATTCAAGAAACTATACCAGAAAAAGTTAAGATGAAGAAGGAA
GGCATAAAAAGAAGTGACAGGCTAACAGAAAGGTGGGACAGTAAAAAGGCTGAAATGTGCATCA
CAGCTCCAAGCAGGTAAAAAGGAATGCTACCAACACTACCCCAACACAATTTAGTAAGGTGCCA
CATACTCCCTCCATCCCAAAATATTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCGTTCGT
CTTATTCAAAAAATTTAAGTAACTATTAATTCTTTTCCTATCATTTGATTTATTGTTAAATATA
CTTTTATGTATACATATAGTTTTACACATTTCACAAAAGTTTTTAAATAAGACGAACGGTCAAA
CATGTCTAAAAAAGTCAACGGCGTCAAACATTTAGGGAAGGAGGGAGTATCATATTGCCGCCAA
TACTCTTTAAAATAAATGGAAATTAATACAGTAACCATCAGTGTCAATGTTTAACTTTGGCTTG
TTAACATTGGTTGGATTAACCATTAATATTTTTTCAATAATACTATGCCTATATATGTCTATCT
GCATGTTTATAACTCTTTGTTAAGTGTCGCAAAGGAAAATAAAGAACAACTTTTACTTATGATA
TTAATTGATTCATGCACAAGTTAGTGCATATGTAGTGTTTCATGTACGTTTGACCTTCTGTGTT
TCATCCGATGTTTTATAAGTGCCAACAACACCATGCACGTTGTGCAGTTCTAAACACAAAAAAA
ATACTGTTGAAATATTTTTTTTCAACTTTTAAATTAATCTATGTATTGCCAAATTGCATTATCT
TATGGGTACCCTTATCTTATTGATTAGAATCAATAGTTATTGAACAATTATAATAATAGAGAAG
TTTCTAGGTGGCACCTGGTTCATTTCTCCTACAAGATGATATAGTATCTTCAATCCTATGAAAT
AATGATCCTGGGATGCCTGAAATGAAAAGCATAAGCAGCAACTTTAGTATGCATCAATTAACTC
GCAATAGAGCATGGAATAAAACCTATAACTGTTCCTCATATGGATTCTTTAATAGAAATCAGGT
TCTTATGTAGATTTATCTGGTAGGCCGGTTATCCTTTTTCATATTACTTAGTTCTAAAGAACGG
GCATTGGTCATAGAAATTGCCAAGGATTTATGTACCAAGGTGTATAGCTCCACTCAAATCGAAG
GTACATAGTCCTTAAATATGTTATCAACGGTTAAAAAGCTCTCAACTAAATGCCAACAAAACAG
ACAACAAACTTACAAGAGATAAGAAATCAGCTGCCTCCTTGACAATATCTCTGAATTTATCATC
ATCAAACCATCCAAATTTTGTAATTCGACAGACAAGCTGAATTAGGGATTTAATCACAAACGTC
TGCAGTTTAGGTCCCCTCATAGCAAGATAGTTTATGACATAATTCGCTTCAAACAGATCACAAT
ATATTGGTTTAAAATTAGCAGTAGACAAGGGCACAAAAGTACACAAAATAGATTTAAGCATTGT
TTATAGACATGTATTTTTGCAATTTAGCTACATTACCGATGCATAAAACAACAATGGGTAAATG
GAAATAAATATTTGGCCATTCTAACATGCTGCAGAGGCATAAATGAATTCAAGGATAGAATGCA
AAGAATAAATATTTGTTTGTTCAACTCGAGCCATATTAAATAAGCATAAGACATCAAAGGCAAC
AGAAATAAGTTGAGTCAAGGAAGGAACAACAAAGATTTAAATATGGCCACTTATACTAAATAGC
AGTACAAACGAGTGCTTACTGCTTTCTGTGGTAACTTGCAATGCAGAAATAATCATAACTGAAT
AAATTGGTAGAGACGTAAATGAAAACATGCCATGCAGATGCAATAGAAAAGCAAAAACAGGTGA
ACAACTGATTTCATGATAAATTTTTGGTAAGGAACATTACAGATATCAAGACGCAATTGCAATG
AAAGACTGCGGTCGTTGACTTGGTTCAACAAGCTTGAACTGGCCAGCATCAGGGCATATGGTGT
TGAGGCATTGTCCAATATATATTGGCACTGTGAAATGTAGTCACTGTTCTCCGAGAAGCACTTG
AGGGTGTTTTCTGCATGTGCTCGCTCAGCGGAGTCTCTAGAATTGTAAAGCTTTTCACATAACA
GCTCTAACTGTGCTAGGCTCTCCATTGATGACATGAATAAGGAGCTCCAATTTTCCAGTAGACC
AAGTATCCAATGTTAATATCCACGAATTTGCATGAATGTTTGTCACAAGCTTAGAGTTAATGCA
CTAGGTATTCGGTTCAACAGGAAACTTGAAAAGTACCACAAGAGCTTTGAAGCAGAAATATATG
ATTCTAGCACAGGAGAAGGATAGTCACAAACTCAATCCATTCATATTACAAGAGAAATGTTTCA
ACAAAAGAGTTTTCTCATGTACAGTCTTTTCAATGACGCGTAATCAAAGATGAAGACCAAAGAC
ACAAGAGAAAACAGCTAACAAGCTTATATCGCCAATACCAGCCACAACTCAGCCTGGGTAGAGT
TAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021