Detail information of AT2G14890_circ_g.4


General Information
CircRNA Name AT2G14890_circ_g.4
ID in PlantcircBase ath_circ_013371
Alias Chr2:6400185|6400663
Organism Arabidpsis thaliana
Position chr2: 6400185-6400663  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer; CIRI
Parent gene AT2G14890
Parent gene annotation AGP9
Parent gene strand +
Alternative splicing AT2G14890_circ_g.5 AT2G14890_circ_g.6 AT2G14890_circ_g.7
Support reads 4
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered AT2G14890.2:1
AT2G14890.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCCAAATTATTTAACTTTCCACCCCTAAATTTTAGGATCTTTTCAAATGTAACCCCGGATTAA
GTAATTGAACTGTGAAGTCCCTTGGCTATTGAAATGccaggttagtaaccttttcttctagatc
ttgtacaatgtgtttcagatctgagatgttttgtctgaacttgaatagatctaaaacggtatga
tttagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGTTAGTAACCTTTTCTTCTAGATCTTGTACAATGTGTTTCAGATCTGAGATGTTTTGTCT
GAACTTGAATAGATCTAAAACGGTATGATTTAGAAAAAAGTGAAAAACATAATTAGCGCAATTT
AGCAAGAAAATGCTAGTCTTTGCTAACGTGCAACCGTATCGTGATTTGATGATTTTGGCTTGTC
TGCCTCGAGATCTTCGAATCCTAGCCGTGAGCGCGTGAGTGCTGTAGTCACGTGACTTTGTCAG
TCTGCACGTGAATAATTTAATACTGCCGCGTGGCAATATTCTTTCGGACCAAAGTAGATCTAGT
TTAGTTTAGTAATAAAAAAACAGTCCAAAGCGTGATGGACGGATTCTCTAAGATCTGCTGTCCA
AATTATTTAACTTTCCACCCCTAAATTTTAGGATCTTTTCAAATGTAACCCCGGATTAAGTAAT
TGAACTGTGAAGTCCCTTGGCTATTGAAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.167921175
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to methyl jasmonate
Other Information
References Zhang et al., 2020