Detail information of Zm00001d030366_circ_g.2


General Information
CircRNA Name Zm00001d030366_circ_g.2
ID in PlantcircBase zma_circ_006629
Alias zma_circ_0000258
Organism Zea mays
Position chr1: 126652906-126657622  JBrowse»
Reference genome AGPv4.38
Type   i-circRNA
Identification method find_circ
Parent gene Zm00001d030366
Parent gene annotation Mediator of RNA polymerase II transcription subunit 34
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGTGGGAAGGCCGCTACGGCTGATGGGTGGGAAGGCTACGGCGGCTAGAAATTTAGGAAAAC
CCTAATCTTAACATCCTCTATTACCATGTTACTAACcctgggattgacaaatgataattagtcc
ctaaggacatatgatatatataggcaataggcctaggcctaatgggccttaacacacctcctca
aactcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGGATTGACAAATGATAATTAGTCCCTAAGGACATATGATATATATAGGCAATAGGCCTAG
GCCTAATGGGCCTTAACACACCTCCTCAAACTCAAGGTGGAAATGGAGGATCTGAAGCTTTGAG
TTTGATCAAGTGAAACTGATGTTGTGCTCTTGTTTGTGCTTTTGGTGAAGAAATCTGGCAATTG
AGATTCTGAGGACACATATTGAAGATCAATAGTCTTCTGCTGACAATGAGATCGAGTAAAAGAT
GCATCGACACCAATGTGTTTAGTAAGTTCATGCTTCACTGGATCATGAGAAATCTGTATAGCAC
TCAAGTTATCACATAACAGAGGTGTAGGAGTGTCACAGGAGACACCAAGATCAGCCAAGAGTCA
GCGCAGCCAAATAATTTCAACAGTGGTAGTAGCAAGAGCCTGAAGTTCGGCTTCAGCACTAGAA
CGAGATATGGCCGCTTGCTTCTTGGATTTCCAAGCAATAGGAGAGGATCCAAGAAGAATACAGT
AACTTGTAGTAGAGCAACGGTCAACAGATCACTTGCCCAAGTGGCATCAGAATACGCATGTAGC
TGAAGTGGGCTATCAAAAGCATAGAGTAAACATCTGGATCTTGTCCCGCGTAAATATCGAAGCA
CACGAAGCAAATGACCATAATGAACTGAGGTTGGTGTGGATACAAATTGGTTCAACATATGAAC
AGCACGAGCAATATAAGGTCTGGTGATGGTGAGATAAACAAGACTACCCACAATATGACGATAT
CGAGTTGGGTCTTCTAGTGGTGTCCCATCCTTCAGACGAAGTTTTAAATGAATATCCATTGGTG
TTGCAACTATGCGTGTATCAGTAATTCCAGAGCGATCAAGAATATCTTGTATATACTTGGACTG
AGACAGATAAAAGCCTTTTGGAGTCTGCGGAACTTCAATACCCAAGAAATAGCTAAGTGGACCC
AAATCAGACATCTGAAATTCCTTACTAAGATACTGCTTGACATTAGAAATATGTTCTGAGTTGT
CACCTGTAATCAGCATATCATCAACATATAATAGAAGTAAAGTGCGGCCTTTTGGAGAGACATG
AACAAACAATGCAGGATCATGTTCACTAGTAGAGAAACCAGCAGCTGTGATGACAGAGAGGAAT
CGCTCAAACCAAGCACGAGGGGCTTGTTTCAGTCCATACAATACGCGACAGAGACGACAAACGT
GCCATGAGGGAGTATGAACCCCCAGAGGAGGATGCATATAAACTTCATGTAGATCACCACTGAG
AAAAGCATTCTTGACATCCATCTAGGAGATAGTCCAAGAAGAAGAGGCTGCAACTGCAATCAAG
GTTCGAACAGTAGTCATATGCACAACAGGTGCAAAAGTCTCATCATAATCAAGTCCTTGAGTCT
GTTGGAAACCACGAGCCACAAGACGAGCTTTATACCTCTCAATGGAACCATCTGATTTTGTCTT
AACTTTGAAGACCCATTTACATGTGATAGAAACAACATGCGAGGGTAAAGGAACGATATCCCAT
GTATCAGTGCGTTCAAGAGCAGCCAATTCATCAATCATAGCTAGCTGTCACTCAAGAATCTCAG
AAGCTTCTTGATAAGTAGTGGGTTCAACAATTGCCACACTAGCTCGTGGAAAACCATAACGATC
TGGAGGTTCAATGGTACCACGGTCACGAAGACGATATCCCTGATTAAAAACATCATTAGACTCA
TTATTATTAGTACAAGAATCGGGTACAGGATCACGATCAGGGCCAGCCGTAGAAATGGAGCGGG
AACGACGAATGTAGATTTGGATGACAGGTGGTCTGAAAGACTAAGAAGAAGATGACGTGGAGGT
GGAAGGTGTGTTATAAGAATGAGAACATCAGATGTGGATGTAGAAGATGACGGTTCAGATGCAG
GAATGGAAGGAAGACACATGAAAGAAGTAGATTATGTGAAATAATATGAGGAGTGAGTAGACTG
ATTATGAAAGAAGGGGCGATTTTCATTGAAACTCACATCTCTAGAAATTCGAATACGACGAGTA
GATGGATCATAACAACGATAACCTTTGTGTTCAGAACCGTATCCAAGAAATACACACTCTACAG
AATGAGCAGTCAATTTAGTCCGCTCACGTGGTGGTAACAAGACATAACATATACATCCAAACAC
ACGAAGATGATCATACCGTGGAGGAGTCACAAAAAGAACTTCACCCGGTGATTTGCCAGAAAGT
TTAGATGATGGTTGTCTATTAATGAGATACACGGTAGTGGAAACAGCTTCACTCCAAAAGTGTG
AGGGAACAAAAGAAGATATCAAAAGAGTACGAGCACGCTCAATAATATGACGGTGTTTGCGTTC
AGCAACACCATTTTGGGCATGAGCACCAGGACAAGAAAGTTGAGCTAGAGTACCCTCTATGGTC
AATATCTGGCGGAAATTATCAGATAAAAATTCACCACCATAATCTGAACGAAAAATTGTAATAG
TAACAGAAAACTGGGTGTGAACCATGCGAGTGAAGGACTTGTAAACAGAAGGCAATTCCGAGCG
GCGTTTCATGAAGTAAATCCAAGTATAACGAGAATAATCATCAATAAAAATGACATAATATTAT
GACCACCTTTAGAAACAAACGGGTAAAATATGGAGGTTGTATTTGTTTGCCAAGATGACAACCT
TTACAATGAAAACTAGACTCAACATGTGTAGGACCTAAACATCCTGACTTTATTAGAGTAGACA
GACGAGATCCACATAAGTGACCAAGACAATGATGCCATTGGGCGAACGACGTCGAGGGAATGAA
GCAGCAAGCACATGAGTTGTGGTGATATGGTGTGAAGGAAGATGCAAGGTGTCCAAGATGTAGA
GGCGAGGCGAAGATTTACGACGATGGCCAGTCCCAATCACATCCCTTGTGTGTTCGATCCTGTA
CAAAACAAGATGAGTCATCAAATCCAACAAAACAATTGTGATCAGTAATTTGACCAACTGATAG
TAGATCCATGGATAACTTAGGTACAAAAAATATATTTGGGACAGTAAAATTTGGATCAGAAAGA
GAACCCTTGTGGGTGACATGACATAATGTACCATCAGCAGTCTGAACAGAAGTACCCTCGGTGA
CAGGTGTAGTAGACGCCAACCGTGATTGATCAGATGTCACAAAAGAAGCTCCATAATCAAGAAC
CCAAGATGATGACAAAGCACCAGCAGATGAAGTAGCAGCAACTGCAACTGAGCCTCTAGGAGAT
GGTCCTGTACCACGACCACGAGTAGCACGACGGACACGGAAATCAGCCAACTTCTCTGGAAACT
TAGCAAAGCAGTTCTCAGACCGATGAGTGGCCATTTTGCAATGTTCACAAGGCTGGAAACAGGT
GTTTCTTGACTTCTGAGCAGCGGCCAACACACTGTCAGAACTCACACCAGTAATAGAAGACATA
GACTTAAGACGAGTCTCTTCAGCAAGTAATTCAGACAACGCCTGAGCCATGGTGAGTATCAGAA
CTGTGAAGCAGTCTTGCACGAAGAGAATCAAATTCAGATTGAACTCCCATAACAAATCTGTAGG
TAAAAAACTTCTCGATGAACTTGTGAGCTGGGCAAGGCACAGCTGTACAAGCAGGCACCATAGA
GGTCAATGCACTCATAAGACGATCAAAGGCGGAATAGTATTCATCAATGGACATATCATGTTGC
TCAATGACATGAGTCTGTTGCATAAGGGTATGTAAAAGAGCACCGCTGTCCTGAACAAACCGGT
CCTTCAGATGTGACCAGATAGCTTTAGCAGTGGTGAATTTGGACAGACTCATAATCATAGTTGG
TTTAGTGCTTTTGACCATTGCAGTCATTACCTTACCATCATTGATCTGCCAAGTCTTGATTGCA
GCAGCATTGCTTCTATCGGCTGCTAAAACTGGTGAATCTTCAGTCAAATGAAATAGTAAACCGT
GACCTCTTAATGCAGTCTAAACACAAAAGGCCCATTCTGGGTAATTCTGCCCATCAAGCACAAT
ATTGACAACAATAGCGTTGGCTGACATATTGAAGAGCAATAAAACACTAAAGAATAACAGATCT
GAGAGAGACTGGCTGAATGGTACCAAAATCCCTAGCGGGAGCAGCGGATGAACAGTGGATACGC
CGGTTGCATTCCTGGACGAAACCGTGCAAATTCATAGCAGATCGAACAGAGTACAGCAGATCTG
GTCTAGGCTGCGTGCGACGCAGAAGCAGACGGCAGGACGACGCAGATGGTGCGGCAGCGAACAC
CCTGTGTTGCGCGCTGACGGCGAAGAACAGCGGGGCCGCGACGAACGGCGCAGATGCGGGGGTC
GCAGCAGCTCCGCACGCGGGGAAACCGCGCAACAGCGGCTGACGGGAGGCCGCGACGGCGGCTG
GCGAGGCGGACCGCTCGCGGGGGAACCGCGCGACGGCGGTGGACGAAGATGATGCCGGCGGACC
GCGCGCACGACGACGGGCTACGCGAGGGGAAGCCGCGCGGCGGCGGACGAAGACGGCGCGCGCG
ACGAAGGGCCGCGCAGCCTGGTAGAGGCAGAGGACCTCGACGGCGGCCAACAGGAGAGGACCGC
GACGGCGGCTAGGTGGGAAGGCCGCTACGGCTGATGGGTGGGAAGGCTACGGCGGCTAGAAATT
TAGGAAAACCCTAATCTTAACATCCTCTATTACCATGTTACTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.228567292
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b